Gene detail

Detailed information of OS493_017444-T1 in Lophelia pertusa

Genomic Location: scaffold_56:201170...213132
NR annotation: KAJ7385079.1, Sterol regulatory element-binding protein 2 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_017444-T1

ATGGCGGATCCTTCTGGTGAAGGTTGGCCGTCGTATATGAGTGAAACAATGCCCGGTTTAGAGCCGAATTTCAACAACGATAGAAGCATGAATGAGCCCATGATGGGGGACTTTGACGAGGGATTTCTGGATTACCTATGTGGACCAACCGCAACCTCTAATCCACAACACACTAGTGCAACAGTCGGGGTCAACATAAAGACTGAGCCAACGCAGATCATCCTATCACCACCAATAACACCTCCAGAGTCAATGGCTACAGATGAAGATTGCACGTCATCCTTCAACTTTGCAGACTACCTCTCAAAAGTAGCACCTCAGCAAGAGCAATCAGGGCTTTCAATGTTCCAACCTCAGCTTCAAGTGAAGCAAGAAGCAGAGGTTTATAATCCAAACCTGAATTGTACTGCTGAACAGAGTCAGAACACAGCAACTCAGCATCTCATCAATTTACTCCAAGGGCAGAAGACCCAACAGGTGTTACCTGCTATGCATACCAAGAGCTTAGAACAGCTTCTTCAGGAGCCGTCAATTCTTGCTCCAACTTCTCAGCCTCGCACTGTCACAGTTCAGCAGCCACCTCAAGTCCAGCAACCATCACTTGTAACACAGCAGGTTCAGCAGCCATCCCAAGCAACCCCTCAGCTCCTGCAGCTATTGCTACAGCAGCAGCAGCAACAACAACTGCAGCAGCAGCAGCAGCAACTGCCACAACTGCAACCCAAACCTCAGCTACCAACACCACAGTACTCCGTCAGCCAGCCTGCATCAAATCAGAATGTTCTACTTCAACAGCTTTTGCAGCAGCTTGGTGTGTTGCCCAAGCAGACTGCAATAGCAGTGCCGCAGCAACAGGTGACCGTTCCTGCCGAGCAGCCATCTCCACAGCAACAGGTTCCTTCCCCTGGGTCTGTGTCGTCATTGTCGTCGACTCCTGGATCACCACTCCAGCCAGGCTCTCCACTGTCTCCTGTTCATTCGCAGGCTGCCAGTCCACAGACACAGCAAGCTCATTTCCAACCACAAATTGTCAAGTCAGATTCTACTACTACAGTCATTGGAACTATAGAACTGAGTCAATCATCTCTTCAGCCTACACTGTCTCAAGGACCCAACGGTGTCCTTACAGCGACAATCCCTATTGTGTTGGACCCTAGCAAGATTCCCATCAGTCGTCTGTCAAATTGTAAAGGACAAATAGGGGTCAAAACAGAAAAGCGCTCGGCTCACAATCTGATTGAGAAACGTTACCGCACCAGTATTAATGACAAGATTGGGGAGTTGAAGGACCTTGTTTGTGGGCAAGATACCAAGATGAACAAGGCTGGTATATTGAGGAAGGCAATAGAGGTTATACTGAAGCTTCAGAATGACAATGCACGCCTCAAAAAAGAGAACATGGCATTGAAGATGGCACAACAAAAGAGAGAAACCATCACTGAGCTTGTCCGAAAGCAAAAGGAACATCGAATAAAGAAGGAAGTAATAGAAGATATTGATATCAGTGACTCAGGACCAGATGCTGATGAGATTGAAGAAATCACCAAGCCTAGCGTTATAGCAAGTCCTTTAACACCGCCAACGCCAGATCCTTTGATGAAGGACAAGACTCACATCAAGATGGAAGCTTTGCCTGTCAGCAGCTGTGGAATGATGGATCGAACACGCGTTGCTTTGTTTGCGTTCATGTTTACCTTCTTGTTTATCAACCCACTGAGTTATGTCGTTCCCCAGCTGGACAAAGGCATGTTTTTCTCCAACTCTGCGGTAAGCGAGAGGCAACATGCTGGTGGTAGAACCTTGAATTCTTACGATGATGCTAGTCCCATGCAGCAGGACAACTGGTTGCTGAGTGTTGCCCTGTTTGCCGCCAAGTGGCTGCTTCATGCAGTCATAGCCATTGCAGTGTTGGTGCGCATCTTTGTGTTTGGTGAACCTGTGACAAGACCACACTCTGATAATGCAGTCCTGTTCTGGAGACACAGGAACCAAGCTGATGAAGATTTGGCCAAGGGAGATGCCATTTCAGCGTCACGGCACTTGGAGATCTGCTTGAGGGCTCTGAAGCGTCCACTTCCTGTTTCCAAGCTTGACGTAGCTTGTGGCTTGATCTGGCAGGTCATGCGTCATGTCCTTCACAGGCTCTGGGTTGGAACATGGCTTGCTTCTGCTGCTGGAGGAATAAAGCTGTGGAGAGGAAGCACGGATACCAAGGATCATGCTGGAATATCAGCAAAGGATGCAGCAATGGTGTACCATAAGTTACATCAATTGAGCCTTACAGGTCATGTGTCGGTGAATGGCTGGCGTTCTTCCTTCCTTGGCCTGGCAGCAGTGAACCTGGCAGAGACTGCCAGGAAACTAATCAGCATAGACGTCTTAGCAGAGATCTATGTATCAGCTGCAATTCAAATTAGGACTTCATTCCCTGATGGGCTTCACTTCAGTGCAAGATACTTCCTTGGCCGAGCACAGACCTCTTATGCAGCTCACGGCACAACAGTGCCAGCTTCACTTCAGTGGCTCTTCCAACCACAGGGACACCGCTTCTTTGTCAGCAGCCGGTGGTCATGCAAAGGAGGCGATAGCTTGTGGGCCAGTGTCAGCAATAAAGCTGACCCAATTGCCCATGTTAGTCAAGTGTTCCGGGAACATCTCCTTCGCTATGCACTGTCCTCCATTGTATTGCCAAGTGCAACTGATGATGATACTACCGGTGACGAAAGTGCCCGTGATGCCCTCAGCTACCTACACATGCTGAATGAGTGTGCGTCGACCAGCGAAAAGCCTGTGAACATGTCTTCAGTTGTTGGGGATGACCAAGTGGCTAAGTGGTGGGTGGCGGTGGGGATGGTGGCTGTTCATTGGCTGCGAGGTGAAGATGAGGCTGCAGAGAGGTATTACAGTACAGTTGAAAGTGTCCCCAAGAGTCTGTGGAATGCAGAGGATCCCGTGGCAAACTCCAGAGATCCATTAGCCAAAGCCATTTTAAGGGCTTATCTAGCCAAGAAGCAAGTCCTTACAGGTAGTGGGGACATGCTGGCCAGCTCCCTCGAAGACTGCACACAGCTGTGCAAGAAATCAGGCCTTCACCTGCAGGAGAGCATCAACCTTGCGTCTTCTCTGTACCAGTCCAGTGCAAACCGGCTGCACCAGCTGGCACAACTGCTGTGCTGTGATTGGCTGTTGGGCACGCGCAAGGATATCTGGGAGTTCTCGCAGAAGTCTCACTTAAGCGCCGTAGTGCCCACTGATCAAGTAGAGCTTCGTTCGTTTCAGAATGACTTGGAGAGTCTGCAGAAACTCACTCACAACCTTCCTGCAGCTCTTCCAAGGCTTTATTTATACGAGGCTGTAGCTCGTCTGATGGCTGGAGCCAACCCACAGAGACTCACCATCTGTTACAGAGGAGCACCCTGA

Transcript

OS493_017444-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WTN3	Sterol regulatory element-binding protein 1 OS=Mus musculus OX=10090 GN=Srebf1 PE=1 SV=4
Q60416	Sterol regulatory element-binding protein 1 OS=Cricetulus griseus OX=10029 GN=SREBF1 PE=2 SV=1
P56720	Sterol regulatory element-binding protein 1 OS=Rattus norvegicus OX=10116 GN=Srebf1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005329 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00010 all species →	HLH	Helix-loop-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011598 all species →	Domain	Myc-type, basic helix-loop-helix (bHLH) domain	Interproscan
IPR036638 all species →	Homologous_superfamily	Helix-loop-helix DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46062 all species →	STEROL REGULATORY ELEMENT-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046983 all species →	Molecular Function	protein dimerization activity	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07197	SREBP1, SREBF1; sterol regulatory element-binding transcription factor 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_017444-T1 global co-expression network