Gene detail

Detailed information of OS493_017458-T1 in Lophelia pertusa

Genomic Location: scaffold_56:363855...368355
NR annotation: KAJ7385093.1, hypothetical protein OS493_017458 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q52T38	Protein S-acyltransferase 24 OS=Arabidopsis thaliana OX=3702 GN=PAT24 PE=1 SV=1
Q9SB58	Protein S-acyltransferase 8 OS=Arabidopsis thaliana OX=3702 GN=PAT08 PE=1 SV=2
E7F021	Palmitoyltransferase ZDHHC12-B OS=Danio rerio OX=7955 GN=zdhhc12b PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005830 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01529 all species →	DHHC	DHHC palmitoyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001594 all species →	Domain	Palmitoyltransferase, DHHC domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22883 all species →	ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016409 all species →	Molecular Function	palmitoyltransferase activity	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0006612 all species →	Biological Process	protein targeting to membrane	Interproscan
GO:0018230 all species →	Biological Process	peptidyl-L-cysteine S-palmitoylation	Interproscan
GO:0019706 all species →	Molecular Function	protein-cysteine S-palmitoyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017458-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017458-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

30.4Max TPM

9.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.88	11.49
polyp at pH7 6	18	16	7.28	10.47
coral polyp · control treatment	16	16	12.15	20.93
coral polyp · oil and dispersant treatment	16	16	11.98	30.40
coral polyp · oil treatment	16	16	12.38	16.96
coral polyp · dispersant treatment	16	16	7.53	13.66
Polyp	10	9	7.76	15.99

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.40
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.99
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.41
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.59
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.06
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.07
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.20
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.76
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.19
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.01
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.73
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.71
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.42
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.15
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.73
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.86
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.78
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.47
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.