Gene detail

Detailed information of OS493_017505-T1 in Lophelia pertusa

Genomic Location: scaffold_56:1027443...1028507
NR annotation: KAJ7385134.1, Hs6st1p [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0MGZ7	Heparan-sulfate 6-O-sulfotransferase 3-B OS=Danio rerio OX=7955 GN=hs6st3b PE=1 SV=1
Q91ZB4	Heparan-sulfate 6-O-sulfotransferase 1 OS=Cricetulus griseus OX=10029 GN=HS6ST1 PE=1 SV=3
A0MGZ5	Heparan-sulfate 6-O-sulfotransferase 1-B OS=Danio rerio OX=7955 GN=hs6st1b PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004958 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010635 all species →	Family	Heparan sulphate 6-sulfotransferase/Protein-tyrosine sulfotransferase	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12812 all species →	HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0015015 all species →	Biological Process	heparan sulfate proteoglycan biosynthetic process, enzymatic modification	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0017095 all species →	Molecular Function	heparan sulfate 6-O-sulfotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02514	HS6ST1; heparan sulfate 6-O-sulfotransferase HS6ST1	EC:2.8.2.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017505-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

31.5Max TPM

6.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.24	8.74
polyp at pH7 6	18	18	6.29	10.79
coral polyp · control treatment	16	16	7.06	15.16
coral polyp · oil and dispersant treatment	16	16	7.89	28.88
coral polyp · oil treatment	16	16	8.49	31.49
coral polyp · dispersant treatment	16	16	3.77	8.43
Polyp	10	10	6.05	11.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.06
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.30
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.90
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.34
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.74
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.78
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.95
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.94
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.65
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.16
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.22
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.35
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.87
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.84
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	11.17
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.20
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	2.73
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.