Gene detail

Detailed information of OS493_017542-T1 in Lophelia pertusa

Genomic Location: scaffold_56:1539280...1540279
NR annotation: KAJ7385165.1, melanosome organization [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08687 all species →	ASD2	Apx/Shroom domain ASD2	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014799 all species →	Domain	Apx/Shrm Domain 2	Interproscan

PANTHER

No PANTHER signature was detected for OS493_017542-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_017542-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017542-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017542-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

83.8Max TPM

46.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	47.21	74.28
polyp at pH7 6	18	18	45.41	61.76
coral polyp · control treatment	16	16	58.53	83.78
coral polyp · oil and dispersant treatment	16	16	52.44	75.86
coral polyp · oil treatment	16	16	54.26	72.25
coral polyp · dispersant treatment	16	16	29.64	57.12
Polyp	10	10	29.88	46.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	74.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.78
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.01
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.14
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.70
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.66
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.21
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.11
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.08
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.83
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.97
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.23
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.14
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.94
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.46
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.62
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.75
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.81
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.57
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.13
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.83
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.90
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.58
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.35
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.04
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.47
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.18
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.01
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.47
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.26
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.92
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	46.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	43.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	41.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	41.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	39.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.26
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.69
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.45

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.