Gene detail

Detailed information of OS493_017631-T1 in Lophelia pertusa

Genomic Location: scaffold_57:278402...291402
NR annotation: KAJ7379133.1, Histone acetyltransferase kat6b [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_017631-T1

ATGGCTCGTGGAAGAAGCAGTGTTGGAAAGGAGAAGGAAAAGGAAAAGGATAAAGACCGTGAGCCGGATCCAAAGTATGCTTTGTGGATAATCGCTGCTATAGGCAAGGTCAAGGGACAAAAGCAACGGCCGAGCGAGGACAGGATCTCTCACATTCTTGAAACTGTTTATGGCTTAGACCAACAAGAGGCTCTGGAACAACTTGAACTGTGCGTGAAAGTAGGCAAAGTTCTGAAGGTAGTTTTTAAGAACAAAGCCTCATACAAGGACCCTGCTAAAGTTCCTCATCATTTGCGAGGAGCTGTTGAAAAACCCACAGACTTCCTGGAGCTCATCAAGGAAGCTCTTGAGAATGTAGGAGATGAAAACGGGTGCACACAGCAGGCTATTAATAGTTATATAGTGGATAATCATGCAGCAAGTTTGGAATCTCCTAGCAATACACAACTACGGCTCAAAGAGTCTCTCAAGAAAGGACTTGCTTCTGACGCCTTCATCAAGGAAGGAAGATATTACAGGCTTGCATCACTTCCCAAGCCTAAGAAAAAGAAAGTCGATGCCAGCACTTATTGTGGGTTTTGCCTTGGAACGGGCGAGCGCAACAAAGATGGTGTAGAAGAAGAACTCATTTCCTGTGCTGACTGTGGAAATAGCGGTCATCCATCTTGCTTGAAATACTCTCCTGAGTTAACAGGTCGTATTAAACAAGAACCCTGGCAGTGCATTGAGTGTAAAGTGTGCTCTGTCTGTCAAGATGCTGGCAATGCTGATAACCTTTTATTCTGTGATGCATGTGACAAAGGATTCCACATAGAATGTCTCTCTCCTCCAATGACGGAAACACCTACAGGAAGCTGGGTTTGTTCAGGGTGTAAGGTGAAAACACCTGGTAGACGGAAGAAAGGACAGATAGAAACTCCGATTACCAGCCCACCACGCAGAAAAATTCAACCTCAAGCAACAGCTGAAGTTCAAGGATCAAGTGTGTGTCCAACACCTGGATGTGACGGAACAGGACATGTAAATGGACGATTTACATCTCATAGGAGTCTTCCAGCTTGCCCTGTTGCAAATGAGACCAAAAAAGTTGAGGATGAACCAAAGCCAGCTGGCGATGAAACTCCTAAAAGACGGCCTGGTAGACCACCTGCGTCCAGTAAGGCACAGCCAATGACTCCTCTCTCTCCTACATCACCTAGAAAGCAACAACAACTACCGCCAGGAGTAACAGAGGAAGATCTAGCACTGTTCAAACAGGCTCAAGAGAAAGCTAATGCTGCCATGAACCTGGATACATCTACCACTCTTGTACCAAGTACTCGCTCACCCCCACTCATCCAGTTTGGTCGGTACGAGATAGTTACATGGTACTCTTCACCATATCCCCAGGAATATGCCAGGCTTCCAAAACTGTACCTGTGCGAGTTTTGCCTCAAGTACATGAAGAGTACCAGCATCCTTATGCGTCACATGACAAAGTGTAAATGGTTTCATCCTCCAGCTAATGAAATTTACCGTAAAGGTGAAATCTCTGTATTTGAAGTGGATGGCGCAGTTAATAAGATCTACTGTCAGAATCTTTGCCTGTTAGCCAAGCTGTTTCTTGATCACAAGACTCTGTACTATGATGTGGAGCCATTCCTGTTTTATGCGTTGACAAAGAATGATAAGAAGGGATGTCATTTGGTGGGATATTTCTCAAAGGAAAAGTCATGTCAACAAAAGTACAACGTGTCCTGTATAATGACCATGCCTCACTATCAGAGACAAGGATTTGGCCGTCTGCTTATCGACTTCAGTTACCTGTTGTCGAGAATCGAAGGCCAGCCCGGCTCCCCTGAAAAACCTTTGTCAGACCTTGGCTTGATCAGCTACCGTAGCTATTGGAAGAGTGTGTTACTAGAGTATCTGCACGACCATAAAGAACGACATGTCACCATAAGAGGGATAAGCAAGTCGACTGGTATGGATCCGCATGACATTGCTGCTACACTACAGATACTCAATATGGTTCATAAACGCGACGGCAAGTTTGTGCTGTGTGTGAACCAACGCCTGATCAACACTCACATGGACAAACTGAGAAAGAGTAACCGCACCTCGCTGGATCCTGACGCACTCAGATGGACCCCTCTGGTGCACACTAATTTGGCGCTAATCGACAAGGAGAATGAAACGACCAACGGGGCTCACGAGGGGGGCAAGAATGGTACAGATCATGACACCAGCGAGACGGACAAGAATGCCCCAGAGGACCCCCCCAACGATGGACAAGTGGATGTGCTTAACAATAGTCATGATGATGTAAAGTCCAAAGATGGATTAATTGTAAACGGAATTGCTGGAGATGAAGATGATGACAGTGCTTCCGAGGAAGATGACGAGGCACCGATTATTCGCCCGAGAAAGCGTCGGCGAAGTAACACGCTTTCCGACAGCGGTTCGGAGAAAACCGAAGTGAAGGTGAGCGAGGAAGGAGCAGTGAAGAGCGAGGCAAATTCAAAGGAAGAAGCTGAGTCCGAAACTACGACTAACAAAAAGCTGAACAGCGCAGAACCCGAAACAGAAGTCGTCAAGAAGAGAATGAAATTGAACGACGAAGAGCCGAGCGCTGATGCTAGCGAAGATTCAGCTGATAACTCTGACTCCGAAGATTCTTCGTCATCTTCGTCCTCGTCGTCTTCGTCGTCGTCCGAAGACAGCGATAACGGTGAAGCTATGGACGATAACGAAGATAATCCTGCCGGGCAGAACGAAGACATCCGTAAAGGCTCCGAAGATGGCACGAGCGAATCGTCGTCCGAAATGAATAACTCGCCCGCGGGCGTTTATGCGGGATTCGGAAACCAACCAGGTCATCGAGATCCCTTAGCAAGTTTAACAACCGATCCAGAGATTGGAATGGACCCGGCCTTCTCGAGATTGTCACCGAGTTTCGAATGCAAGGAGAGTAACCCGTCAGATAATTTAGCAGTTGATCAAGATATGAACCCTGTGGTTGATTTCCCAGACACGGATAGCACGGCACTCATTAAAGAACTGTCCGAAGAGGTGTTCTCTATCGGGGCCACGCCCTCACTTGGAGGGCAACACTCTTCAGACGAGGAGATTTGA

Transcript

OS493_017631-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WML3	Histone acetyltransferase KAT6B OS=Macaca fascicularis OX=9541 GN=KAT6B PE=2 SV=1
Q8BRB7	Histone acetyltransferase KAT6B OS=Mus musculus OX=10090 GN=Kat6b PE=1 SV=3
Q5TKR9	Histone acetyltransferase KAT6A OS=Rattus norvegicus OX=10116 GN=Kat6a PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000833 (this species only)
Ubiquitin family	E3\|E3 activity RING\|PHD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01853 all species →	MOZ_SAS	MOZ/SAS family	Family	Interproscan
PF01530 all species →	zf-C2HC	Zinc finger, C2HC type	Family	Interproscan
PF00628 all species →	PHD	PHD-finger	Domain	Interproscan
PF21524 all species →	SAMD1_WH	SAM domain-containing protein 1, WH domain	Domain	Interproscan
PF17772 all species →	zf-MYST	MYST family zinc finger domain	Domain	Interproscan
PF00538 all species →	Linker_histone	linker histone H1 and H5 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019787 all species →	Domain	Zinc finger, PHD-finger	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR002717 all species →	Domain	Histone acetyltransferase domain, MYST-type	Interproscan
IPR016181 all species →	Homologous_superfamily	Acyl-CoA N-acyltransferase	Interproscan
IPR048589 all species →	Domain	SAM domain-containing protein 1-like, WH domain	Interproscan
IPR002515 all species →	Repeat	Zinc finger, C2H2C-type	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR005818 all species →	Domain	Linker histone H1/H5, domain H15	Interproscan
IPR040706 all species →	Domain	MYST, zinc finger domain	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR001965 all species →	Domain	Zinc finger, PHD-type	Interproscan
IPR050603 all species →	Family	MYST family histone acetyltransferases	Interproscan
IPR036060 all species →	Homologous_superfamily	Zinc finger, C2H2C-type superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10615 all species →	HISTONE ACETYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004402 all species →	Molecular Function	histone acetyltransferase activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0000786 all species →	Cellular Component	nucleosome	Interproscan
GO:0006334 all species →	Biological Process	nucleosome assembly	Interproscan
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0070776 all species →	Cellular Component	MOZ/MORF histone acetyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017631-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_017631-T1 global co-expression network