Gene detail

Detailed information of OS493_017647-T1 in Lophelia pertusa

Genomic Location: scaffold_57:493316...499287
NR annotation: KAJ7379149.1, hypothetical protein OS493_017647 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001012 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04989 all species →	RMNT_CmcI	Rhamnosyl O-methyltransferase/CmcI	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063 all species →	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR007072 all species →	Family	Rhamnosyl O-methyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR40048 all species →	RHAMNOSYL O-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008168 all species →	Molecular Function	methyltransferase activity	Interproscan
GO:0008610 all species →	Biological Process	lipid biosynthetic process	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0030206 all species →	Biological Process	chondroitin sulfate biosynthetic process	Interproscan
GO:0071770 all species →	Biological Process	DIM/DIP cell wall layer assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017647-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017647-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

51.5Max TPM

16.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	19.60	51.50
polyp at pH7 6	18	18	20.06	31.51
coral polyp · control treatment	16	16	16.12	25.61
coral polyp · oil and dispersant treatment	16	16	14.30	44.10
coral polyp · oil treatment	16	16	15.28	30.48
coral polyp · dispersant treatment	16	16	14.93	33.51
Polyp	10	10	11.56	16.17

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.50
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.14
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.31
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.94
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.69
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.32
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.89
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.67
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.77
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.05
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.37
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.35
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.61
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.36
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.37
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.54
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.20
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.50
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.36
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.67
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.96
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.20
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.74
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.62
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.62
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.29
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.64
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.99
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	14.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.41
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.45
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.58
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.88
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.94

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.