Gene detail

Detailed information of OS493_017704-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1103611...1112944
NR annotation: KAJ7379200.1, hypothetical protein OS493_017704 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_017704-T1

ATGCTTGAAGTGGCCAAAAAGGCCAAACCAACCACTTTGACACCCCAGGGAAGTCCAGCTTCATCAGCACCGAGCACTCCAAAAAAATCTGCAATGACTGAACGTATTGCACAAGAAAAGGCCAGACTGAAGAAACTTGAACATGAACTGTCAGAAAAGCTAAAGTTGTATGGTAGACAGAAGGGCGAGGGGAAAAACTCTTCTTTAGTGTCACCAAGCAAACCATCACAGAATAACAAAGACAGTTTGGATGTCAAGAGAAGTGAAAGAGATGAAAAACAGCCCGTTCAAGTTGGTACTAGTAGTAGTAATTCAAGCCACCTTTTGTCAGAAAGACAAGATTTTGATTCCAGAGGACAGAGTAATCAGTTTCTTGATGGCGAGAAAGAGGTTGCGTCGTCCAAAGATAGCAAAACACCAGAGGCAGTGGAGTTGACCATTACTGCTCAGCAACTGGAGTGTATCAGAAAATTACAGGCTGAAAAGGAAAAGAAAGGTCCCCAGTTTTCTGCTTCCAATCTTGACATCCCATTAACAGCTCATCAACGCTCTACCCTTTGTGTTTGTTTGCCCTTTGGTTGTGAGCTTAAAAACACTGTAACAGACCAAGACACTGGCGGCTTGTGTGGAGAGGAACACAGAGGTACTGAATCTGCTGCAGCTGGAGAAATCAACAGCAGAGGTGGTGATGAAGTATTGTCATGTCCTTTAGAAAAGTATCAGAGTCAACTGTTGCACTTGAAGTCTTACAGATTGAGCCCATATTTCAGAATCCAAGGTGGATTTTCTCTCACCTCTCTCACATTCTCAAACAAACTGAATCCTGCCTGGCCACTCTGTAACTTTGACTTGCAAGGCAAGTGTAATGACGAGGACTGTAAATTCCAACACTCCATTGCATGCAAGCTTTCGCATGAAGAAACACTGCAGGATCTGGCTGCGTATGACCCAGACCTCACTGTGGATTGTAAAGACTTGAAGGAGCTGCAAGAGCGCATTGAATCTTTCACAAAGACTTTTACAAAGCAATATCAAGACAAGATGTCCTGGGATGAGCTTTGTATTTTACTGGTTAATGACGTGAAGAAGCACAGGAAAGGAAATGGACCTTTTAATATCTCTCTTCAACCTCGAACCTGGAAGTTACAGCAAACCAACAAGAAACGAGTTGAATACAATGAGGATGATGGTGCGGATGATTTTGGCAAGGGGATTGTTTTCTCCAAGAAAGGCAAAATCCATGGTGCAGTTTCACAAACTAGAGAGTCTAATGGAAGGCTGACAAGGCCTGCCGCTGAAGAAAGTCAAGAAATACGTTACTTTTTGGAAGAATATAACAGCATTGAAGCTCTTGAAGCATCACTAGACAACTCCCCTGGTGATGTAGCTTTGTGGATCAAGTTGGCTCGGTTAAAACTTCATCAAAACCATGATGCTACCCATGCTGAGAATGAGGACAGCAGGAACAATGTTATGCGGGCACTTAGTACACTCTCCAGAGGATTGGAGGAAAATACACAATCAGAGGAGTTATGGTTAGAGTACTTGGAGTTATATTCCTCACAGAGCAGCAGACAGGAGCTGAGAGAGATTTGTGACCAAGCTGTGGAGTTCTCGCCGACGTACAGTGTTTGGTGGAAGTACCTGGAATACTCACAGACATACCACGACAAGAGGACTGTTTGTTTACGTTTGATTTCCTTTCTCACAGTGAACCCCTTTGATCCGGTAGAACTTCACTCACATTGTCTTCTTGAAACATTGCTCTATCTCATACAACTAGAACTGTATTCTGGCCATTACAAGTCAGCGCTGGCTGTGTTCAAGGCAGCATTAGCTAAGAAACCTGGCAGCAGCTCCAGTGAGGTCCCGGATTTGTCCAGTCGTCTGCTGCCTTCTGACATTTGTTTTGCCTGGTTGGCGTACATTCATGTGTTTGAATTTCACCGACTTCCTGCACCTTGGTTTGATCCTCGTCATGGCAAGCCATCCAGGATGGTGACAAAAGAAGACTTAGTGTTTCCATGGAAACCATCTCAACAATCCAGAGCTCCCGGGGAGAAACTGTTGGTAATGTTTCAAGATGCGTTAAAAGCATGCAGTGTCCTGGCGAAATCCTTCGCAGACAAACTCACCATTTGTCTTCCACTGTACAAGAATCTCATTGCCCTGGAGCGAGCCTATGGACGAACTGACTCTGCCAGAGGAATCTGCCGCCATCTGCTGAAGGACAACCCTACAGTGGTAGTGCTGTGGTTGTGTCTAGCAGCTCTTGAAGACTCTATGGAGAAGGGTGGAGGTGTGGAGCAGGTGTACATAGAGGCACTAGACAAGTGTGAGGGTCATGCTGAGTTGTCATACAGTGCAGCGCGCTTTTACCTAGAGCAGAATGAAGTACAGAAAGCAGTGTCAGTTTTAGTCAAGTGTGTTCATTGCAAGTTTGCAACAGCGAGTGAGCCACAGGAAGGTGAAGTGCACAGCCTAGCCACCATCCCTTCAGAAGACCAAGATGTTGATCCTGTGGCACTGTACTGCAAGCTCCTGTCTCAGCCTCTTCCTTATGACTACAAGTGCCCACCTCTTATGCCGGGTGTTAACCCACAGAGCTTGGGCAGAGAGAAGCTCTTTCTTTGGTTGTCTTACTGCTTGTTACTGGAGATTTCACCGCCTGCCACTACCTTGTGGGACAACCTGACAGCAGAGTCAGCATTTGAGACTGCTGTGCATAGCCCTCTTGACAGACAAGACGTGCAAACACTGTGGATAGACTACCTCTTCTACCAGAGATCCAAAGCCTCACGAGACACGTCATCATCGTCGCTGCTTCAGCAGCAATCCATGGATGAGTTAGTAAACAGGTGTTTAATGTCAGTGAGCACCAGCTGCTCCCTGCCTCATTCTTCAAGCGCTGTTTGGCAGGATTACAGATTTCACAATCAGGTCATCAGTATATCTTTGAGCTGTCATCCACAGTCATCTTGGTCAGCTGTCTTTAAAAAGTACTTGAGGTTATTTCCTGGGAGTGTCAGCTTAGCATTGCGGGCTTGCAAACACGAGGTGGAGAAGAAACGCTCTGACCAAGCGAAGAGGATCAGTGCTTCTTTCCTTTCAGAAAATCCTTACAGTATTAGCATGTGGAAAGTGGCCATTTCTATTGAGCTTCAGAGAAATTGTGTCAAAGAGGCACGCAAGATGTACCAACAGACCACCGAGATTTTACCATTCGCTGCAACCCTCTGGAAAGATTTTTTGATGTTTGAGCTTGCTCGGAGTGGCAATGGCACTGCTGTTCAAGAGATTCTGGCAAAGAGTCGACAAATAGGTGTCGAACTTGAGGAGTTTTTGAACACTCTCCTGGGTAAATGA

Transcript

OS493_017704-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O60293	Zinc finger C3H1 domain-containing protein OS=Homo sapiens OX=9606 GN=ZFC3H1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003882 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08424 all species →	NRDE-2	NRDE-2, necessary for RNA interference	Family	Interproscan
PF10650 all species →	zf-C3H1	Putative zinc-finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR013633 all species →	Family	siRNA-mediated silencing protein NRDE-2	Interproscan
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR039278 all species →	Family	NURS complex subunit red1	Interproscan
IPR019607 all species →	Domain	Putative zinc-finger domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21563 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000178 all species →	Cellular Component	exosome (RNase complex)	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017704-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_017704-T1 global co-expression network