Gene detail

Detailed information of OS493_017706-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1126218...1135955
NR annotation: KAJ7379202.1, Histone-lysine N-methyltransferase setd3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B7ZUF3	Actin-histidine N-methyltransferase OS=Xenopus tropicalis OX=8364 GN=setd3 PE=2 SV=1
A9X1D0	Actin-histidine N-methyltransferase OS=Papio anubis OX=9555 GN=SETD3 PE=3 SV=1
Q86TU7	Actin-histidine N-methyltransferase OS=Homo sapiens OX=9606 GN=SETD3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006901 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09273 all species →	Rubis-subs-bind	Rubisco LSMT substrate-binding	Domain	Interproscan
PF00856 all species →	SET	SET domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036464 all species →	Homologous_superfamily	Rubisco LSMT, substrate-binding domain superfamily	Interproscan
IPR001214 all species →	Domain	SET domain	Interproscan
IPR050600 all species →	Family	SETD3/SETD6 methyltransferase	Interproscan
IPR044428 all species →	Domain	SETD3, SET domain	Interproscan
IPR015353 all species →	Domain	Rubisco LSMT, substrate-binding domain	Interproscan
IPR046341 all species →	Homologous_superfamily	SET domain superfamily	Interproscan
IPR025785 all species →	Family	Actin-histidine N-methyltransferase SETD3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13271 all species →	UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016279 all species →	Molecular Function	protein-lysine N-methyltransferase activity	Interproscan
GO:0018023 all species →	Biological Process	peptidyl-lysine trimethylation	Interproscan
GO:0018026 all species →	Biological Process	peptidyl-lysine monomethylation	Interproscan
GO:0018064 all species →	Molecular Function	protein-L-histidine N-tele-methyltransferase activity	Interproscan
GO:0030047 all species →	Biological Process	actin modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19199	SETD3; protein-histidine N-methyltransferase	EC:2.1.1.85	Cytoskeleton proteins	ko04812	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017706-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

14.5Max TPM

7.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.23	11.23
polyp at pH7 6	18	18	8.51	10.88
coral polyp · control treatment	16	16	8.70	14.08
coral polyp · oil and dispersant treatment	16	16	4.63	10.38
coral polyp · oil treatment	16	16	7.77	14.15
coral polyp · dispersant treatment	16	16	5.93	12.81
Polyp	10	10	7.99	14.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.06
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.57
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.12
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.88
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.56
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.68
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.37
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.13
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.08
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.07
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.90
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.81
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.07
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.26
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.85
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.27
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.60
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.