Gene detail

Detailed information of OS493_017737-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1371799...1378258
NR annotation: KAJ7379228.1, ATP synthase F(0) complex subunit B1, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P13619	ATP synthase peripheral stalk subunit b, mitochondrial OS=Bos taurus OX=9913 GN=ATP5PB PE=1 SV=2
P24539	ATP synthase peripheral stalk subunit b, mitochondrial OS=Homo sapiens OX=9606 GN=ATP5PB PE=1 SV=2
Q5RFH9	ATP synthase peripheral stalk subunit b, mitochondrial OS=Pongo abelii OX=9601 GN=ATP5PB PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007462 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05405 all species →	Mt_ATP-synt_B	Mitochondrial ATP synthase B chain precursor (ATP-synt_B)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013837 all species →	Family	ATP synthase, F0 complex, subunit B	Interproscan
IPR008688 all species →	Family	ATP synthase, F0 complex, subunit B/MI25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12733 all species →	MITOCHONDRIAL ATP SYNTHASE B CHAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000276 all species →	Cellular Component	obsolete mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)	Interproscan
GO:0015078 all species →	Molecular Function	proton transmembrane transporter activity	Interproscan
GO:0015986 all species →	Biological Process	proton motive force-driven ATP synthesis	Interproscan
GO:0046933 all species →	Molecular Function	proton-transporting ATP synthase activity, rotational mechanism	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02127	ATPeF0B, ATP5F1, ATP4; F-type H+-transporting ATPase subunit b	-	Diabetic cardiomyopathy	ko05415	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017737-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

824.7Max TPM

239.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	246.85	355.47
polyp at pH7 6	18	18	270.69	329.67
coral polyp · control treatment	16	16	246.10	818.33
coral polyp · oil and dispersant treatment	16	16	213.55	824.74
coral polyp · oil treatment	16	16	225.65	331.93
coral polyp · dispersant treatment	16	16	128.78	269.12
Polyp	10	10	401.73	570.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	355.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	353.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	340.28
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	326.48
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	264.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	258.62
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	257.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	254.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	250.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	243.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	225.43
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	206.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	198.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	195.74
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	188.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	187.11
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	170.55
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	166.35
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	329.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	328.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	327.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	316.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	308.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	303.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	294.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	282.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	265.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	261.51
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	251.63
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	249.74
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	242.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	240.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	239.26
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	231.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	204.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	194.83
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	818.33
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	288.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	276.46
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	255.73
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	229.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.88
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	206.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	203.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	201.50
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	193.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	186.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	176.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	161.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	824.74
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	202.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	199.08
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	198.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	194.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	187.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	185.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	184.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	177.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	173.52
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	159.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	158.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	140.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	129.97
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	331.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	267.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	246.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	241.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	233.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	231.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	222.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	220.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	215.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	212.11
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	205.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	202.47
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	197.92
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	195.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	190.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	269.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	242.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	178.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	153.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	150.75
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	110.14
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	101.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	92.17
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.77
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.37
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.07
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	570.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	514.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	457.71
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	419.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	404.31
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	367.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	349.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	331.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	308.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	292.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.