Gene detail

Detailed information of OS493_017758-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1574826...1609947
NR annotation: KAJ7379249.1, hypothetical protein OS493_017758 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_017758-T1

ATGCAAGAAGGAGCAGGGACGGATGCCAACGAATACATCACCATTTACGGTACCACAGGAGAGTCACAGGAAAAGAAGCTGAGCAACTTGCTTGAAAATAACTTCGAGAAAGGAAGTATCTCGTCAGAAAACAAGCACAATTTGGCTAAGCTAGCAAAGTGCTGTATTATATACAAGCGTTTACAGCGACATGTTCCCACCTATCTTAAAAGTTTACTTTTAGTCGGCAATTTTTTGCTGCAAATAATGGACGTTTGTGAAATAAAAAAGATAAAAATAAGACACGATAACTTTGGAGCGTGGAATCTTAAGCAGAGTTATTTTCCTGAACAAGCAAAATTTCAAGACGCATCAAATCAAGAGGGTTGTGAAGGTGTGTTTCAGGATGCGACCCACTGTTGGCCGTTTAACGACGCTCAATCTAACGCATCTCCTGATTTCAAAGGAAGTTTCCCTGCTGAACTGAAGGATGGTGCTGGAATAGCTGACTCCGTAGCAAGAGGAAAAGTGGCTTCTACACTGGTGCAAAATAGTTGGATTGATTTGGGCGATTTTAATGGAAAATGTATCAGTGATCCAAATATGTGCAAGGATGGTATTACCATGATGTTCTGGGCAAAAATCGACCAATCAGCTCTCGCGAACAACCCCGATCTACCAAAATACGTGTTAACTAGCGGAGGAGCAGATCAGAGATCCCGGGGATTCTCTCTCTTCAGTCAGAACAACAGATTTGTACTTAGAGTGGTGGCAGCTGGTAAGAAATGGAGGATAGAAATACCAAATGGAAAAATACCGCTCAATTCCTGGTTTTCATTCGCTTTGACTTGGAGCATGGCACAAGGGCTGAGATATTTCCTCGATGGACAAGAGGATGGTTTCAAGCTTCAAGGTGACGCCACTGGTGTAAGCCATGATAACAACTTCAACGATCTCAGGATAAGTAAACCCAATAGCAACAATCTAGTAGAGGATATTCTACCAATGAAATTTGACCAGCTCGTCGTATGGAGTAAAGTTTTGCAAGCCGATGGCATAACAAAGGCTTTCGAGGAGGGTGGCGGACTACCCTCGAACGATGGACAAGGTAATCCACAAGCTTGCGCCGCTAGCCCATGCCTAAATGGAGGGACTTGTGAACTTGACGTTGACTCGCCTGACGGGTATCGCTGCGTCTGTGATCTCCATCAATTTGCTGGACTAAAATGCGAAATGAAGGAAGACGTCGGGAATGCGCAAACCACTCCAGCACCTACAACTACACCAGCTACCACTAAAGGTGCTACAACTGCACTAGGTACAACGACTGCGTCAGGTACTACTGCAGCAGCCTCTCCAACCGTCCAACCCTCGACCACGCCCAAGGCCTCAAGTCCAAAGCCAGATATAACCTCTCCAACCGTCCAACCCTCGACCACGCCCAAGGCCTCAAGTCCAAAGCCAGATATAAAACAATTGATAAAGGATCTACAGAAACAAGTAAACATTTTTCGAAGACTTCACCAATCCTCTGATGTGTCACCATCCGAAGAACTGAACCAGTTGGCCAGCAACTGGGCGCAGAAACTCGCAGCTGAAGGAGCAGAAAAGATAGACCCTGACTCCAAATACGGGCAACTGGTGTGCAGCCACCACGAAGGAAGCAAACTCGTTAAGGCATGCGCAGTAAAGTGGTATAGTGCGATCAAGAACTTTGACTGGGCTGACCCTAAGTTGACTGTGGAAGCGACGCCTTTTACACAGATGGTGTGGAAAAATAGCTCAGGCGTAGGAGTTGGTATAAGTAAAGGGGCTGGAGGTGCCAAGAGACGGGGTATTGCCGGCAAATATTACGTTGTGGTATATTTTGACCCTCCACAGAGTGATGAAGAAAATATCAAGGACAACGTTCTGCCTGCGGCAGGAATGTCTCAACCGGCTCCGGGTGCTTCCTGTCCAGAAGGTTTCTCTAAGCTCCCTGTGGGCACCAGTCGATCATGTTTCTCTGTCCGTGACACACCCATGTCCTGGGATGACGCCCTCCTTGACTGTGCACTAGATAATGGCACACTGGCCTCGCTAGACTGCAGAGAGGAAGCTGACTTGGTTGTGAACTTACTTTCACAATCCAACGTATCGGAAGCCTGGATTGGACTGCATGACCGTTCAACGGAAGGTCGATTTGTGTGGCTTGATGGATCCCCGATTCCCTTCTCCGAGTGGCTGCCTGGCGAGCCTGATGGCAATGAAGCTGAGAACTGTATCGTGCAAGCAAAAGGCGACTTCGGACCTGGTTGGGCTGACAAGCACTGTGCTGACAGCAAGGCGTTTGTCTGCGAGGTGCCCGTGCCTGGTTATACGTCCTATAAATTAACTTTTAACCTAACCGAGCAACAGCCGGCTCAGTCCTACCAGAACCCCGCGGACGTCTATTCCTCCCAGTCTGTCGGCTATCCTGGATCCTACTACTCCATGTGTTCACCCGTTATTAAGAGTGTGAATGATCTTCTCAGAGAAACGATCTCTCGTTATTTCGAAGCAAAGAATATTACAGTCCAACCAGTAGTCAACACAATCAGGTGCATGCCAAATGGTAAATCACTTGTTGAGGTTACTTTGACGCTTGGTCCAGAGACCAATTCTGATTCCATTCAGTCGCTACAAACCAGCATCAAAGAGAATGACGGAGAACTTGAGCTGTCGAACGGAGCATCTGCAAAACTCATCTCTGTCGAGATTCTCAGTCCAGGAGTGTCCTACTGTCCAAACCAATGTGGGGCCAGCACTTGCCAGGCAGGTTGTGACCCAAGCTGCTGCGCCCAGGCTCCCTCGACAGCTGCACAGCAACAGCCGTATCCCTCGCCAGTGATCTACCAACCTGAACCTATCTACACCGCAGGGAAAACCCCATGGCAGTGCCCCATCTCCTGCACTAGGAACGTCAACTATTGCCCTCCATACTGCGCGTCGAGTTGCTGTAATAAAAGGCGATCGCGAGTGAAAATACATAAGTTTTAA

Transcript

OS493_017758-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TT06	Pulmonary surfactant-associated protein A OS=Ovis aries OX=9940 GN=SFTPA1 PE=2 SV=1
Q6RXL1	Pulmonary surfactant-associated protein A OS=Bos taurus OX=9913 GN=SFTPA1 PE=2 SV=2
Q98TA4	Mannose-binding protein OS=Gallus gallus OX=9031 GN=MBL PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00188 all species →	CAP	Cysteine-rich secretory protein family	Domain	Interproscan
PF13385 all species →	Laminin_G_3	Concanavalin A-like lectin/glucanases superfamily	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014044 all species →	Domain	CAP domain	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR035940 all species →	Homologous_superfamily	CAP superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR013320 all species →	Homologous_superfamily	Concanavalin A-like lectin/glucanase domain superfamily	Interproscan
IPR050801 all species →	Family	Calcium-Dependent Lectins in Immunity and Development	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22801 all species →	LITHOSTATHINE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017758-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_017758-T1 global co-expression network