Detailed information of OS493_017787-T1 in Lophelia pertusa

Genomic Location: scaffold_57:1856843...1863938
NR annotation: KAJ7379274.1, Coiled-coil domain-containing protein 94 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A8WHR3Splicing factor YJU2 OS=Danio rerio OX=7955 GN=yju2 PE=1 SV=1
Q9D6J3Splicing factor YJU2 OS=Mus musculus OX=10090 GN=Yju2 PE=1 SV=1
Q9BW85Splicing factor YJU2 OS=Homo sapiens OX=9606 GN=YJU2 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007519 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04502
all species →		Saf4_Yju2Saf4/Yju2 protein FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007590
all species →		FamilySaf4/Yju2 proteinInterproscan
IPR043701
all species →		FamilySplicing factor Yju2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12111
all species →		SPLICING FACTOR YJU2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0008380
all species →		Biological ProcessRNA splicingInterproscan
GO:0071006
all species →		Cellular ComponentU2-type catalytic step 1 spliceosomeInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_017787-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_017787-T1 global co-expression network
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