Detailed information of OS493_017829-T1 in Lophelia pertusa

Genomic Location: scaffold_57:2193842...2195583
NR annotation: KAJ7379316.1, Cryptochrome-1 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q16526Cryptochrome-1 OS=Homo sapiens OX=9606 GN=CRY1 PE=1 SV=1
Q8WP19Cryptochrome-1 OS=Macaca fascicularis OX=9541 GN=CRY1 PE=2 SV=1
Q32Q86Cryptochrome-1 OS=Rattus norvegicus OX=10116 GN=Cry1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001198 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03441
all species →		FAD_binding_7FAD binding domain of DNA photolyaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002081
all species →		FamilyCryptochrome/DNA photolyase class 1Interproscan
IPR005101
all species →		DomainCryptochrome/DNA photolyase, FAD-binding domainInterproscan
IPR036134
all species →		Homologous_superfamilyCryptochrome/DNA photolyase, FAD-binding domain-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11455
all species →		CRYPTOCHROMEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0032922
all species →		Biological Processcircadian regulation of gene expressionInterproscan
GO:0043153
all species →		Biological Processentrainment of circadian clock by photoperiodInterproscan
GO:0045892
all species →		Biological Processnegative regulation of DNA-templated transcriptionInterproscan
GO:0071949
all species →		Molecular FunctionFAD bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_017829-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_017829-T1 global co-expression network
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