Gene detail

Detailed information of OS493_017870-T1 in Lophelia pertusa

Genomic Location: scaffold_58:262420...267637
NR annotation: KAJ7372599.1, hypothetical protein OS493_017870 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91XV4	L-xylulose reductase OS=Mesocricetus auratus OX=10036 GN=DCXR PE=1 SV=1
Q91X52	L-xylulose reductase OS=Mus musculus OX=10090 GN=Dcxr PE=1 SV=2
Q1JP75	L-xylulose reductase OS=Bos taurus OX=9913 GN=DCXR PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001090 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13561 all species →	adh_short_C2	Enoyl-(Acyl carrier protein) reductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051737 all species →	Family	L-xylulose reductase/Carbonyl reductase	Interproscan
IPR020904 all species →	Conserved_site	Short-chain dehydrogenase/reductase, conserved site	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44252 all species →	D-ERYTHRULOSE REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004090 all species →	Molecular Function	carbonyl reductase (NADPH) activity	Interproscan
GO:0005997 all species →	Biological Process	xylulose metabolic process	Interproscan
GO:0006006 all species →	Biological Process	glucose metabolic process	Interproscan
GO:0050038 all species →	Molecular Function	L-xylulose reductase (NADPH) activity	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017870-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017870-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

33.3Max TPM

9.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.92	14.44
polyp at pH7 6	18	18	11.43	17.99
coral polyp · control treatment	16	16	10.38	33.32
coral polyp · oil and dispersant treatment	16	16	6.65	19.64
coral polyp · oil treatment	16	16	7.97	12.69
coral polyp · dispersant treatment	16	16	7.63	14.34
Polyp	10	9	12.00	27.71

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.44
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.33
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.99
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.62
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.43
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.30
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.44
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.56
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.17
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.45
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.07
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.12
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.07
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.69
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.47
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.29
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.31
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.60
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.90
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.69
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.71
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	21.16
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.56
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.61
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.69
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.30
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.71
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.