Gene detail

Detailed information of OS493_017887-T1 in Lophelia pertusa

Genomic Location: scaffold_58:591917...597588
NR annotation: KAJ7372616.1, BTB/POZ domain-containing protein kctd5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A5PKG7	BTB/POZ domain-containing protein KCTD5 OS=Bos taurus OX=9913 GN=KCTD5 PE=2 SV=1
Q8VC57	BTB/POZ domain-containing protein KCTD5 OS=Mus musculus OX=10090 GN=Kctd5 PE=1 SV=1
Q9NXV2	BTB/POZ domain-containing protein KCTD5 OS=Homo sapiens OX=9606 GN=KCTD5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001748 (this species only) · gene tree & orthology
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02214 all species →	BTB_2	BTB/POZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR003131 all species →	Domain	Potassium channel tetramerisation-type BTB domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14958 all species →	POTASSIUM CHANNEL TETRAMERISATION DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051260 all species →	Biological Process	protein homooligomerization	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0031463 all species →	Cellular Component	Cul3-RING ubiquitin ligase complex	Interproscan
GO:0043161 all species →	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0097602 all species →	Molecular Function	cullin family protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21914	KCTD2_5_17; BTB/POZ domain-containing protein KCTD2/5/17	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017887-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

69.5Max TPM

31.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.29	36.16
polyp at pH7 6	18	18	27.48	45.89
coral polyp · control treatment	16	16	42.73	69.47
coral polyp · oil and dispersant treatment	16	16	36.79	54.54
coral polyp · oil treatment	16	16	37.58	67.53
coral polyp · dispersant treatment	16	16	26.77	56.13
Polyp	10	10	21.49	42.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.12
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.81
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.25
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.38
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.35
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.29
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.71
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.60
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.56
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.96
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.80
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.59
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.22
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.29
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.44
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.44
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.42
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.24
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.83
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.62
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.88
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.37
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.54
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.59
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.99
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.36
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.04
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.91
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.82
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.29
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	23.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	22.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	20.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.90
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.24

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.