Gene detail

Detailed information of OS493_017900-T1 in Lophelia pertusa

Genomic Location: scaffold_58:670294...674204
NR annotation: KAJ7372629.1, hypothetical protein OS493_017900 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GR34	Uncharacterized protein C16orf52 homolog A OS=Xenopus laevis OX=8355 PE=2 SV=1
Q7SZ07	Uncharacterized protein C16orf52 homolog B OS=Xenopus laevis OX=8355 PE=2 SV=1
Q8NHV5	Modulator of smoothened protein OS=Homo sapiens OX=9606 GN=MOSMO PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008507 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18800 all species →	Atthog	Attenuator of Hedgehog	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037663 all species →	Family	Modulator of smoothened protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31186 all species →	MODULATOR OF SMOOTHENED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan
GO:0045879 all species →	Biological Process	negative regulation of smoothened signaling pathway	Interproscan
GO:0060170 all species →	Cellular Component	ciliary membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23663	MOSMO; modulator of smoothened protein	-	Hedgehog signaling pathway	ko04340	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017900-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

94.7Max TPM

35.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.20	35.96
polyp at pH7 6	18	18	23.66	30.99
coral polyp · control treatment	16	16	42.37	66.79
coral polyp · oil and dispersant treatment	16	16	60.99	83.44
coral polyp · oil treatment	16	16	40.91	58.47
coral polyp · dispersant treatment	16	16	36.24	94.73
Polyp	10	10	15.70	27.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.94
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.25
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.57
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.40
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.25
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.20
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.46
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.04
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.02
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.37
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.26
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.79
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	61.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.13
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.23
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.40
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.44
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.00
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	73.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.98
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.99
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.38
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.32
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.38
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.75
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.15
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.84
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.73
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.63
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.73
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.96
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.53
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.74
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.65
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	18.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	18.45
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.83
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.23
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.81
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	6.09

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.