Gene detail

Detailed information of OS493_017919-T1 in Lophelia pertusa

Genomic Location: scaffold_58:837397...838923
NR annotation: KAJ7372647.1, hypothetical protein OS493_017919 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P0C7A1	Cytosolic endo-beta-N-acetylglucosaminidase OS=Gallus gallus OX=9031 GN=ENGASE PE=1 SV=1
Q8BX80	Cytosolic endo-beta-N-acetylglucosaminidase OS=Mus musculus OX=10090 GN=Engase PE=1 SV=1
Q9SRL4	Cytosolic endo-beta-N-acetylglucosaminidase 2 OS=Arabidopsis thaliana OX=3702 GN=ENGASE2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003382 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03644 all species →	Glyco_hydro_85	Glycosyl hydrolase family 85	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032979 all species →	Family	Cytosolic endo-beta-N-acetylglucosaminidase	Interproscan
IPR005201 all species →	Domain	Glycoside hydrolase, family 85	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13246 all species →	ENDO BETA N-ACETYLGLUCOSAMINIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0006517 all species →	Biological Process	protein deglycosylation	Interproscan
GO:0033925 all species →	Molecular Function	mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017919-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017919-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

64TPM > 0

7Conditions

64.9Max TPM

3.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	6	2.99	21.30
polyp at pH7 6	18	5	2.17	11.55
coral polyp · control treatment	16	14	7.42	64.87
coral polyp · oil and dispersant treatment	16	11	2.44	18.26
coral polyp · oil treatment	16	12	4.57	31.66
coral polyp · dispersant treatment	16	7	1.32	5.50
Polyp	10	9	2.58	8.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.30
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.61
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.87
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.89
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.13
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.53
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.46
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.44
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.18
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.66
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.14
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.59
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.44
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.