Gene detail

Detailed information of OS493_017932-T1 in Lophelia pertusa

Genomic Location: scaffold_58:973721...975513
NR annotation: KAJ7372660.1, Dynactin subunit 5 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9QZB9	Dynactin subunit 5 OS=Mus musculus OX=10090 GN=Dctn5 PE=1 SV=1
Q9BTE1	Dynactin subunit 5 OS=Homo sapiens OX=9606 GN=DCTN5 PE=1 SV=1
A0A286ZK88	Dynactin subunit 5 OS=Sus scrofa OX=9823 GN=DCTN5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009289 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21711 all species →	DCTN5	Dynactin subunit 5	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011004 all species →	Homologous_superfamily	Trimeric LpxA-like superfamily	Interproscan
IPR047125 all species →	Family	Dynactin subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46126 all species →	DYNACTIN SUBUNIT 5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005869 all species →	Cellular Component	dynactin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017932-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017932-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

69.9Max TPM

20.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.43	34.35
polyp at pH7 6	18	18	16.36	20.91
coral polyp · control treatment	16	16	25.13	38.55
coral polyp · oil and dispersant treatment	16	16	24.87	69.93
coral polyp · oil treatment	16	16	24.92	34.69
coral polyp · dispersant treatment	16	16	16.58	28.74
Polyp	10	9	15.51	30.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.74
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.26
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.26
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.33
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.88
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.07
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.86
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.41
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.83
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.52
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.94
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.77
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.26
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.93
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.26
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.92
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.09
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.01
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.61
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.86
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.41
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.76
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.42
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.76
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.73
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.40
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.08
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.10
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.63
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	30.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	17.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.78
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.39
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	12.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.