Detailed information of OS493_017997-T1 in Lophelia pertusa

Genomic Location: scaffold_58:1560509...1565161
NR annotation: KAJ7372723.1, 26S proteasome non-ATPase regulatory subunit 12 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9D8W526S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus OX=10090 GN=Psmd12 PE=1 SV=4
O0023226S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens OX=9606 GN=PSMD12 PE=1 SV=3
Q5RBI326S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii OX=9601 GN=PSMD12 PE=2 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006994 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01399
all species →		PCIPCI domainDomainInterproscan
PF18098
all species →		RPN5_C26S proteasome regulatory subunit RPN5 C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR040134
all species →		Family26S Proteasome non-ATPase regulatory subunit 12/COP9 signalosome complex subunit 4Interproscan
IPR000717
all species →		DomainProteasome component (PCI) domainInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR040896
all species →		Domain26S proteasome regulatory subunit RPN5, C-terminal domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10855
all species →		26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0008541
all species →		Cellular Componentproteasome regulatory particle, lid subcomplexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_017997-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_017997-T1 global co-expression network
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