Gene detail

Detailed information of OS493_018034-T1 in Lophelia pertusa

Genomic Location: scaffold_58:1983135...1984292
NR annotation: KAJ7372756.1, Soluble calcium-activated nucleotidase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VCF1	Soluble calcium-activated nucleotidase 1 OS=Mus musculus OX=10090 GN=Cant1 PE=2 SV=1
Q8K4Y7	Soluble calcium-activated nucleotidase 1 OS=Rattus norvegicus OX=10116 GN=Cant1 PE=1 SV=1
Q8WVQ1	Soluble calcium-activated nucleotidase 1 OS=Homo sapiens OX=9606 GN=CANT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008905 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06079 all species →	Apyrase	Apyrase	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036258 all species →	Homologous_superfamily	Apyrase superfamily	Interproscan
IPR009283 all species →	Family	Apyrase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13023 all species →	APYRASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0017110 all species →	Molecular Function	nucleoside diphosphate phosphatase activity	Interproscan
GO:0004382 all species →	Molecular Function	GDP phosphatase activity	Interproscan
GO:0030166 all species →	Biological Process	proteoglycan biosynthetic process	Interproscan
GO:0045134 all species →	Molecular Function	UDP phosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12304	CANT1; soluble calcium-activated nucleotidase 1	EC:3.6.1.6	Pyrimidine metabolism	ko00240	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018034-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

15.0Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.09	6.03
polyp at pH7 6	18	18	4.86	8.27
coral polyp · control treatment	16	16	6.10	12.74
coral polyp · oil and dispersant treatment	16	16	7.58	15.01
coral polyp · oil treatment	16	16	5.64	10.25
coral polyp · dispersant treatment	16	16	4.93	11.19
Polyp	10	10	3.26	4.43

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.03
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.01
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.30
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.20
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.69
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.54
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.36
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.33
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.77
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.01
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.15
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.51
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.35
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.99
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.41
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.86
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.98
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.92
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.71
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.35
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.43
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.