Detailed information of OS493_018079-T1 in Lophelia pertusa

Genomic Location: scaffold_59:227910...234294
NR annotation: KAJ7360095.1, Protein transport protein Sec23A [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15436Protein transport protein Sec23A OS=Homo sapiens OX=9606 GN=SEC23A PE=1 SV=2
Q5R9P3Protein transport protein Sec23A OS=Pongo abelii OX=9601 GN=SEC23A PE=2 SV=1
Q01405Protein transport protein Sec23A OS=Mus musculus OX=10090 GN=Sec23a PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005212 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF08033
all species →		Sec23_BSSec23/Sec24 beta-sandwich domainDomainInterproscan
PF00626
all species →		GelsolinGelsolin repeatDomainInterproscan
PF04815
all species →		Sec23_helicalSec23/Sec24 helical domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036175
all species →		Homologous_superfamilySec23/Sec24 helical domain superfamilyInterproscan
IPR012990
all species →		DomainSec23/Sec24 beta-sandwichInterproscan
IPR007123
all species →		DomainGelsolin-like domainInterproscan
IPR037550
all species →		DomainSec23, C-terminalInterproscan
IPR006900
all species →		DomainSec23/Sec24, helical domainInterproscan
IPR037364
all species →		FamilyProtein transport protein Sec23Interproscan
IPR029006
all species →		Homologous_superfamilyADF-H/Gelsolin-like domain superfamilyInterproscan
IPR036180
all species →		Homologous_superfamilyGelsolin-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11141
all species →		PROTEIN TRANSPORT PROTEIN SEC23Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006886
all species →		Biological Processintracellular protein transportInterproscan
GO:0006888
all species →		Biological Processendoplasmic reticulum to Golgi vesicle-mediated transportInterproscan
GO:0030127
all species →		Cellular ComponentCOPII vesicle coatInterproscan
GO:0090114
all species →		Biological ProcessCOPII-coated vesicle buddingInterproscan
GO:0005096
all species →		Molecular FunctionGTPase activator activityInterproscan
GO:0070971
all species →		Cellular Componentendoplasmic reticulum exit siteInterproscan
GO:0090110
all species →		Biological ProcessCOPII-coated vesicle cargo loadingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_018079-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018079-T1 global co-expression network
TOP