Gene detail

Detailed information of OS493_018084-T1 in Lophelia pertusa

Genomic Location: scaffold_59:282152...288803
NR annotation: KAJ7360100.1, 3'(2'),5'-bisphosphate nucleotidase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z1N4	3'(2'),5'-bisphosphate nucleotidase 1 OS=Rattus norvegicus OX=10116 GN=Bpnt1 PE=1 SV=1
O95861	3'(2'),5'-bisphosphate nucleotidase 1 OS=Homo sapiens OX=9606 GN=BPNT1 PE=1 SV=1
Q9Z0S1	3'(2'),5'-bisphosphate nucleotidase 1 OS=Mus musculus OX=10090 GN=Bpnt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007186 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00459 all species →	Inositol_P	Inositol monophosphatase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000760 all species →	Family	Inositol monophosphatase-like	Interproscan
IPR050725 all species →	Family	CysQ/Inositol Monophosphatase	Interproscan
IPR020583 all species →	Binding_site	Inositol monophosphatase, metal-binding site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43028 all species →	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008441 all species →	Molecular Function	3'(2'),5'-bisphosphate nucleotidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01082	cysQ, MET22, BPNT1; 3'(2'), 5'-bisphosphate nucleotidase	EC:3.1.3.7	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018084-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

14.6Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.30	14.56
polyp at pH7 6	18	18	8.08	13.38
coral polyp · control treatment	16	16	8.79	13.52
coral polyp · oil and dispersant treatment	16	16	7.60	12.42
coral polyp · oil treatment	16	16	7.69	14.61
coral polyp · dispersant treatment	16	16	7.35	12.86
Polyp	10	9	4.39	8.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.60
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.82
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.73
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.59
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.41
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.12
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.44
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.83
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.63
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.81
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.33
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.05
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.28
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.15
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.88
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.21
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.16
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.19
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.41
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.79
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.21
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.