Detailed information of OS493_018103-T1 in Lophelia pertusa

Genomic Location: scaffold_59:524190...541533
NR annotation: KAJ7360118.1, hypothetical protein OS493_018103 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P59807Chondroitin sulfate ABC endolyase OS=Proteus vulgaris OX=585 PE=1 SV=2
Q8A2I1Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / JCM 5827 / CCUG 10774 / NCTC 10582 / VPI-5482 / E50) OX=226186 GN=chonabc PE=1 SV=1
C5G6D7Chondroitin sulfate ABC exolyase OS=Bacteroides thetaiotaomicron OX=818 GN=chonabc PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000631 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02278
all species →		Lyase_8Polysaccharide lyase family 8, super-sandwich domainFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011013
all species →		Homologous_superfamilyGalactose mutarotase-like domain superfamilyInterproscan
IPR003159
all species →		DomainPolysaccharide lyase family 8, central domainInterproscan
IPR014718
all species →		Homologous_superfamilyGlycoside hydrolase-type carbohydrate-bindingInterproscan
IPR011071
all species →		Homologous_superfamilyPolysaccharide lyase family 8-like, C-terminalInterproscan
IPR039174
all species →		FamilyChondroitin sulfate ABC lyaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR37322
all species →		-Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0005975
all species →		Biological Processcarbohydrate metabolic processInterproscan
GO:0030246
all species →		Molecular Functioncarbohydrate bindingInterproscan
GO:0005576
all species →		Cellular Componentextracellular regionInterproscan
GO:0016829
all species →		Molecular Functionlyase activityInterproscan
GO:0006027
all species →		Biological Processglycosaminoglycan catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_018103-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018103-T1 global co-expression network
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