Gene detail

Detailed information of OS493_018147-T1 in Lophelia pertusa

Genomic Location: scaffold_59:1436542...1437642
NR annotation: KAJ7360157.1, hypothetical protein OS493_018147 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P48441	Alpha-L-iduronidase OS=Mus musculus OX=10090 GN=Idua PE=1 SV=2
P35475	Alpha-L-iduronidase OS=Homo sapiens OX=9606 GN=IDUA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007691 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01229 all species →	Glyco_hydro_39	Glycosyl hydrolases family 39	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049166 all species →	Domain	Glycosyl hydrolases family 39, N-terminal catalytic domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_018147-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_018147-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018147-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018147-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

16.3Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	5.48	11.32
polyp at pH7 6	18	13	4.39	9.86
coral polyp · control treatment	16	16	4.39	16.26
coral polyp · oil and dispersant treatment	16	11	2.19	7.27
coral polyp · oil treatment	16	16	3.89	8.98
coral polyp · dispersant treatment	16	15	4.11	8.13
Polyp	10	7	2.62	6.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.36
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.98
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.67
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.86
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.76
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.91
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.04
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.14
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.09
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.99
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.06
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.98
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.54
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.67
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.65
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.24
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.40
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.