Gene detail

Detailed information of OS493_018173-T1 in Lophelia pertusa

Genomic Location: scaffold_59:1936387...1937156
NR annotation: KAJ7360181.1, hypothetical protein OS493_018173 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3SYC2	2-acylglycerol O-acyltransferase 2 OS=Homo sapiens OX=9606 GN=MOGAT2 PE=1 SV=2
Q70VZ8	Diacylglycerol O-acyltransferase 2 OS=Bos taurus OX=9913 GN=DGAT2 PE=2 SV=1
Q96UY2	Diacylglycerol O-acyltransferase 2A OS=Umbelopsis ramanniana OX=41833 GN=DGAT2A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000769 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03982 all species →	DAGAT	Diacylglycerol acyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007130 all species →	Family	Diacylglycerol acyltransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12317 all species →	DIACYLGLYCEROL O-ACYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004144 all species →	Molecular Function	diacylglycerol O-acyltransferase activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0019432 all species →	Biological Process	triglyceride biosynthetic process	Interproscan
GO:0008374 all species →	Molecular Function	O-acyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018173-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018173-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

25.5Max TPM

8.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.90	10.33
polyp at pH7 6	18	18	7.22	11.18
coral polyp · control treatment	16	16	11.54	25.46
coral polyp · oil and dispersant treatment	16	16	9.33	22.93
coral polyp · oil treatment	16	16	9.32	17.85
coral polyp · dispersant treatment	16	16	8.55	16.78
Polyp	10	9	2.53	5.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.90
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.37
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.72
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.87
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.95
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.51
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.80
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.46
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.31
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.90
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.03
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.93
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.15
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.04
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.27
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.69
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.71
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.81
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.94
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.87
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.78
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.23
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.77
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.30
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.19
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.81
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.59
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.95
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.49
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.79
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.