Gene detail

Detailed information of OS493_018203-T1 in Lophelia pertusa

Genomic Location: scaffold_60:57039...60007
NR annotation: KAJ7333034.1, hypothetical protein OS493_018203 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P69849	BOS complex subunit NOMO3 OS=Homo sapiens OX=9606 GN=NOMO3 PE=1 SV=2
Q5JPE7	BOS complex subunit NOMO2 OS=Homo sapiens OX=9606 GN=NOMO2 PE=1 SV=1
Q15155	BOS complex subunit NOMO1 OS=Homo sapiens OX=9606 GN=NOMO1 PE=1 SV=5

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004649 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_018203-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR051417 all species →	Family	Serine-Aspartate Repeat-Containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23303 all species →	CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018203-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018203-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

70.2Max TPM

32.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	28.93	44.83
polyp at pH7 6	18	18	31.94	60.70
coral polyp · control treatment	16	16	34.00	46.77
coral polyp · oil and dispersant treatment	16	16	33.00	41.42
coral polyp · oil treatment	16	16	35.16	47.57
coral polyp · dispersant treatment	16	16	30.28	58.34
Polyp	10	10	39.23	70.24

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.83
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.04
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.12
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.42
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.56
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.09
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.77
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.70
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.79
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.59
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.80
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.22
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.26
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.68
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.21
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.24
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.44
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.83
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.27
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.88
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.81
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.21
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.98
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.79
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.95
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.53
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.42
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.50
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.58
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.59
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.12
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.05
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.57
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.59
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.58
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.30
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.34
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.95
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.26
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.76
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.80
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.68
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.66
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.02
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.34
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	70.24
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	52.03
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	42.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	35.53
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	35.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	34.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	34.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.86

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.