Detailed information of OS493_018206-T1 in Lophelia pertusa

Genomic Location: scaffold_60:69315...79549
NR annotation: KAJ7333037.1, pseudouridine synthase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q1L8I0Pseudouridylate synthase PUS7L OS=Danio rerio OX=7955 GN=pus7l PE=2 SV=1
Q9H0K6Pseudouridylate synthase PUS7L OS=Homo sapiens OX=9606 GN=PUS7L PE=1 SV=1
Q8CE46Pseudouridylate synthase PUS7L OS=Mus musculus OX=10090 GN=Pus7l PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001686 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01142
all species →		TruDtRNA pseudouridine synthase D (TruD)FamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001656
all species →		FamilyPseudouridine synthase, TruDInterproscan
IPR020103
all species →		Homologous_superfamilyPseudouridine synthase, catalytic domain superfamilyInterproscan
IPR042214
all species →		Homologous_superfamilyPseudouridine synthase, TruD, catalytic domainInterproscan
IPR011760
all species →		DomainPseudouridine synthase, TruD, insertion domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13326
all species →		TRNA PSEUDOURIDINE SYNTHASE DInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0001522
all species →		Biological Processpseudouridine synthesisInterproscan
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0009451
all species →		Biological ProcessRNA modificationInterproscan
GO:0009982
all species →		Molecular Functionpseudouridine synthase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_018206-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018206-T1 global co-expression network
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