Gene detail

Detailed information of OS493_018224-T1 in Lophelia pertusa

Genomic Location: scaffold_60:396612...400324
NR annotation: KAJ7333055.1, UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P24140	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Cricetulus griseus OX=10029 GN=DPAGT1 PE=1 SV=1
P23338	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Cricetulus longicaudatus OX=10030 GN=DPAGT1 PE=1 SV=1
P42867	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Mus musculus OX=10090 GN=Dpagt1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00953 all species →	Glycos_transf_4	Glycosyl transferase family 4	Family	Interproscan
PF21383 all species →	DPAGT1_ins	DPAGT1 insertion domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033895 all species →	Family	UDP-GlcNAc-dolichyl-phosphate GlcNAc phosphotransferase	Interproscan
IPR000715 all species →	Family	Glycosyl transferase, family 4	Interproscan
IPR048439 all species →	Domain	DPAGT1, insertion domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10571 all species →	UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003975 all species →	Molecular Function	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018224-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018224-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

5.7Max TPM

2.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.71	5.07
polyp at pH7 6	18	15	2.68	5.62
coral polyp · control treatment	16	16	3.23	5.71
coral polyp · oil and dispersant treatment	16	16	2.68	5.61
coral polyp · oil treatment	16	16	3.14	5.75
coral polyp · dispersant treatment	16	16	2.27	4.06
Polyp	10	9	2.66	5.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.45
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.81
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.09
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.54
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.22
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.16
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.15
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.61
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.88
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.94
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.69
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.45
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.79
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.14
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.89
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.35
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.98
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.82
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.38
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.82
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.94
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.