Gene detail

Detailed information of OS493_018229-T1 in Lophelia pertusa

Genomic Location: scaffold_60:428759...429859
NR annotation: KAJ7333060.1, hypothetical protein OS493_018229 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0027172 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21107 all species →	STPRs	STPRs (score and three amino acid peptide repeats)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048998 all species →	Domain	STPR domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_018229-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_018229-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018229-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018229-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

11.1Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.79	11.07
polyp at pH7 6	18	18	3.32	6.25
coral polyp · control treatment	16	16	2.81	7.76
coral polyp · oil and dispersant treatment	16	16	2.69	5.97
coral polyp · oil treatment	16	16	2.93	4.76
coral polyp · dispersant treatment	16	16	0.96	2.72
Polyp	10	9	0.48	1.15

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.25
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.40
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.33
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.80
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.64
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.76
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.48
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.45
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.95
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.91
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.18
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.63
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.76
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.68
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.23
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.72
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.87
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.03
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.05
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.22
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.20
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.10
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.