Gene detail

Detailed information of OS493_018233-T1 in Lophelia pertusa

Genomic Location: scaffold_60:500510...506362
NR annotation: KAJ7333064.1, UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P24140	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Cricetulus griseus OX=10029 GN=DPAGT1 PE=1 SV=1
P42867	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Mus musculus OX=10090 GN=Dpagt1 PE=1 SV=2
P23338	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase OS=Cricetulus longicaudatus OX=10030 GN=DPAGT1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006979 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00953 all species →	Glycos_transf_4	Glycosyl transferase family 4	Family	Interproscan
PF21383 all species →	DPAGT1_ins	DPAGT1 insertion domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000715 all species →	Family	Glycosyl transferase, family 4	Interproscan
IPR048439 all species →	Domain	DPAGT1, insertion domain	Interproscan
IPR033895 all species →	Family	UDP-GlcNAc-dolichyl-phosphate GlcNAc phosphotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10571 all species →	UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0016780 all species →	Molecular Function	phosphotransferase activity, for other substituted phosphate groups	Interproscan
GO:0003975 all species →	Molecular Function	UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity	Interproscan
GO:0006487 all species →	Biological Process	protein N-linked glycosylation	Interproscan
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0016021 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01001	ALG7; UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	EC:2.7.8.15	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018233-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

4.8Max TPM

2.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.26	4.32
polyp at pH7 6	18	15	2.26	4.50
coral polyp · control treatment	16	16	3.34	4.84
coral polyp · oil and dispersant treatment	16	16	2.65	4.28
coral polyp · oil treatment	16	16	3.11	4.50
coral polyp · dispersant treatment	16	16	2.15	4.10
Polyp	10	9	2.09	4.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.31
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.86
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.49
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.25
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.33
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.48
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.31
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.28
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.37
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.00
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.94
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.57
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.45
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.73
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.71
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.80
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.