Gene detail

Detailed information of OS493_018269-T1 in Lophelia pertusa

Genomic Location: scaffold_60:821082...830185
NR annotation: KAJ7333095.1, hypothetical protein OS493_018269 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_018269-T1

ATGACGGAGGCGGGAACTTGCGTCGTGTGTAAATCGGGTTTGGATCAAGCGTTTGGTAACGTGTTGAGTTTGCGGGCCGCACTAAGGGATAATCCTTCTTCAAACGCAAATGGATTTGAATCTAAGTCAGTGCTTTGTCATCGCGATTGTTTTATTTGCTCAGTATGTTCTTGTACACTCGAGGAGAATTCGAAGTTCGACGCGTGTGGCGACCGACTGTACTGTACAACACACTGTAATTCAGAAGATCGCGCTCTCATACGGGCGCTGAAAAGCTTCAAAGCGAGATGCCTTGCTTTAAAAACTGCACTGGAAGATGAGATCGCGGTCAATGAATTTCAAGAGGAGATTACAAGCTTTCATTGTGATAGTTGCAGCGACCCGAAATATACACAGAAAGTAACAGGATACCGTGTGGAATGCACCGAAAAGGATTGTCCCACGAGAGACGCCTTTCGAAAAAGTCACGAGATTCGTTTCAAAAGCTGCTGTGATCTCGGCTCGACCAGGGTGGGTGGCCATTTGGCTGCGGTGTCCCCTGAGGAGTTCTATAGACATTTTTTTTACGGGGTAAAACACTGGAATTACTGTTCAATGGAAGAGGATATCGGTGCTGTACTCATTACTTTGAAACCTGAATCAAGTCCGCATTCAAAAGGTTATTTTAGGATTATGGTGCGCTCTTCTTACTACCTTATCTTTGGACTTCTCTCCTCATCAAATCACCATGGCAACTGTCTATCAAGCCGAGAAGAAGTTGTACAGTTTTTAAGCCAACAAATTGGCATCAATGCCCCTATGAAGTTGATTACTGCTCCATCAGCACCGGCTGAAATCCTCAAGATGGACAGCGCATTTAACAAGCAAGCCTACAAATTTGGTGTGGTATACATGAAGGAAGATCAACAAACTGAAGAACATCTGTTTGGTAATGAAACTCATAGCCAGGCATTTGATGAATTTCTTGATCTGTTGGGCGAAAGGATCAGGCTGAGAGGTTTTGACAAATACCGCGCAGGACTCGACGGCAATAACGACCTAACAGGAAAATACTCCGTGTTTACCAAATATAGTAACAATGAGATCATGTTCCATGTGTCAACACTTCTTCCATTTGAAGAATTTGATTCTCAGAAGCTTCAAAGAAAGAGGCACATTGGTAACGACATTGTTTGTATCATATTCATGGAAGCAACGGCGACCAAGTTTGTCCCTGACTGTATCAAATCAAACTTTCTTCATAGTTTTATCATTGTGCAAGTGGATTTGAAGAATAATCCAGGCTTTTATACAGTGTCTGTGGTGTCAAGGGATAATGTGCTATCATATGATCCACCTCTGTATGAGCGGCACGTTTTTGAGAAGAATGATGAGTTTAGAGACTGGATTCTGAAGAAGTTGACTCAAGGTGAACAGGCCTGCCATAGGTCACCAAACTTCTCAAAATTACATGCTCGCACCAGAACACTAATAATGGCAGGGCTTCTCAAGTCTGTCACGAGGAGTTCACATTCTGCAAGCTCGTCTTTACCCAGTGCATCTCATGAACATCACATGACAGTGAGCCAAGTATCCAGGGATTTCAGCTCTGTCAGCACTGCTGGACATGACAGAGGGGACCTGGTAGCATTTCTAGTTGGGGACACAGACAAGAAGAGTTACATTGGAGTAAAGTCGATCATGTCAGCTAAGAGCAAAGTATTTCACAGGATATTTTCTCAAGACCTTGGTCATGTTTACGCGCATTTACCAATGAACAAAACGAGCTCGTCACTAGCCCTTCCCGTGTTAAAACGCACGATCTCATGGACTCGCACCAGTCCTCTGATGCACACAGGGTTGCGCAGCGGCAAGGTGAACCTTGAGAAGCTGAGGCGAAGTCGAAGCGAGGACAGTACTTATGATGAGAGTAGCGTGACCTTAGAATCTGTCACAGATCTTGAAAACAAGAAGGAGAATGACAATACAGTGACCTCGCCACAGTTACAGTGTCAAGAGGTAATCATTGTTAAGCGTTTGATAGCGATGTATTTGAAGCACTACTAG

Transcript

OS493_018269-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SVL6	Rap1 GTPase-activating protein 2 OS=Mus musculus OX=10090 GN=Rap1gap2 PE=1 SV=1
Q684P5	Rap1 GTPase-activating protein 2 OS=Homo sapiens OX=9606 GN=RAP1GAP2 PE=1 SV=2
Q80TE4	Signal-induced proliferation-associated 1-like protein 2 OS=Mus musculus OX=10090 GN=Sipa1l2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001315 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02145 all species →	Rap_GAP	Rap/ran-GAP	Family	Interproscan
PF21022 all species →	Rap-GAP_dimer	Rap/Ran-GAP protein dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035974 all species →	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR000331 all species →	Domain	Rap/Ran-GAP domain	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR050989 all species →	Family	Rap1/Ran GTPase-activating	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15711 all species →	RAP GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0051056 all species →	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0090630 all species →	Biological Process	activation of GTPase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018269-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_018269-T1 global co-expression network