Gene detail

Detailed information of OS493_018277-T1 in Lophelia pertusa

Genomic Location: scaffold_60:884979...893011
NR annotation: KAJ7333102.1, Ribosomal RNA processing protein 1 B [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P56182	Ribosomal RNA processing protein 1 homolog A OS=Homo sapiens OX=9606 GN=RRP1 PE=1 SV=1
Q91YK2	Ribosomal RNA processing protein 1 homolog B OS=Mus musculus OX=10090 GN=Rrp1b PE=1 SV=2
Q14684	Ribosomal RNA processing protein 1 homolog B OS=Homo sapiens OX=9606 GN=RRP1B PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004886 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05997 all species →	Nop52	Nucleolar protein,Nop52	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010301 all species →	Family	Ribosomal RNA processing protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13026 all species →	NNP-1 PROTEIN NOVEL NUCLEAR PROTEIN 1 NOP52	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0030688 all species →	Cellular Component	preribosome, small subunit precursor	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14849	RRP1; ribosomal RNA-processing protein 1	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_018277-T1 global co-expression network