Gene detail

Detailed information of OS493_018282-T1 in Lophelia pertusa

Genomic Location: scaffold_60:909565...914572
NR annotation: KAJ7333107.1, hypothetical protein OS493_018282 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CN40	Uncharacterized oxidoreductase SE_2036 OS=Staphylococcus epidermidis (strain ATCC 12228 / FDA PCI 1200) OX=176280 GN=SE_2036 PE=3 SV=1
Q5HLD8	Uncharacterized oxidoreductase SERP2049 OS=Staphylococcus epidermidis (strain ATCC 35984 / DSM 28319 / BCRC 17069 / CCUG 31568 / BM 3577 / RP62A) OX=176279 GN=SERP2049 PE=3 SV=1
Q6GDV6	Uncharacterized oxidoreductase SAR2567 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR2567 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010414 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00106 all species →	adh_short	short chain dehydrogenase	Domain	Interproscan
PF02234 all species →	CDI	Cyclin-dependent kinase inhibitor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044898 all species →	Homologous_superfamily	Cyclin-dependent kinase inhibitor domain superfamily	Interproscan
IPR002347 all species →	Family	Short-chain dehydrogenase/reductase SDR	Interproscan
IPR003175 all species →	Domain	Cyclin-dependent kinase inhibitor domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42901 all species →	ALCOHOL DEHYDROGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004861 all species →	Molecular Function	cyclin-dependent protein serine/threonine kinase inhibitor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0051726 all species →	Biological Process	regulation of cell cycle	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018282-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018282-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

12.7Max TPM

6.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.38	9.88
polyp at pH7 6	18	18	6.99	12.61
coral polyp · control treatment	16	16	7.72	11.12
coral polyp · oil and dispersant treatment	16	16	5.15	12.73
coral polyp · oil treatment	16	16	6.29	9.19
coral polyp · dispersant treatment	16	16	5.40	11.17
Polyp	10	10	5.50	9.96

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.62
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.69
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.07
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.19
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.25
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.45
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.35
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.76
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.54
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.38
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.12
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.19
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.40
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.36
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.27
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.18
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.46
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.70
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	9.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.45
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.53
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.91
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.76

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.