Gene detail

Detailed information of OS493_018336-T1 in Lophelia pertusa

Genomic Location: scaffold_60:1784988...1788635
NR annotation: KAJ7333160.1, hypothetical protein OS493_018336 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08D62	Protein maelstrom homolog OS=Xenopus tropicalis OX=8364 GN=mael PE=2 SV=1
Q96JY0	Protein maelstrom homolog OS=Homo sapiens OX=9606 GN=MAEL PE=1 SV=1
Q4R786	Protein maelstrom homolog OS=Macaca fascicularis OX=9541 GN=MAEL PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006787 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13017 all species →	Maelstrom	piRNA pathway germ-plasm component	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024970 all species →	Domain	Maelstrom domain	Interproscan
IPR039259 all species →	Family	Protein maelstrom	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21358 all species →	PROTEIN MAELSTROM HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0060964 all species →	Biological Process	regulation of miRNA-mediated gene silencing	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007140 all species →	Biological Process	male meiotic nuclear division	Interproscan
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0034587 all species →	Biological Process	piRNA processing	Interproscan
GO:0043186 all species →	Cellular Component	P granule	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018336-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018336-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

47.1Max TPM

15.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.40	21.72
polyp at pH7 6	18	18	13.67	23.51
coral polyp · control treatment	16	16	18.64	44.58
coral polyp · oil and dispersant treatment	16	16	22.76	47.08
coral polyp · oil treatment	16	16	15.27	30.70
coral polyp · dispersant treatment	16	16	18.00	43.00
Polyp	10	8	5.86	17.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.72
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.98
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.37
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.61
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.61
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.36
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.02
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.60
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.26
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.82
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.58
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.40
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.13
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.98
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.48
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.77
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.83
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.42
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.93
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.33
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.11
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.98
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.31
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.00
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.20
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.56
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.48
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.86
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.