Gene detail

Detailed information of OS493_018344-T1 in Lophelia pertusa

Genomic Location: scaffold_60:1828571...1840803
NR annotation: KAJ7333168.1, hypothetical protein OS493_018344 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_018344-T1

ATGAGTTACCCATCTGAAGATCGACACGAACGTGATGTAGTTAGTGGCCCAGCAAGGAATCCAACTCAAGACATGGAAAAACACGACAAATCTAAAGTTTTGACCGCTAATCCAGGAGTTCCAATGTCAGGCCCTGAGAGTGGAAGTTTTCACAGACCACAAATTGATCAAGCAAATCTTAAGATGGGGAAACCTCTTCAGAATCGTCCAATAGCTCCAGCATCAGGTTCTCTTGCTGGAATGCTTCCTGGTAATCTAGCATCAAGTTTTGTGGCAAGTACTATGCAAGGATTCGGTGCTGGTCATCCTCTGCTAGCTTCGATGATGAGGATGCCCCAACCTGCATTCTCCCATGTTCCAGCAGGGGCTGCCGCAGGCGCGCTTGCTGGGGTGACACCCAGGAACACTTCATTGCGTACACCAACTATGCCCTCTGCTGTCAAGCCTGTGGGACTAACCAGTCAAGCTCATGGGAGCGGAGGACAACCGCAGATACATGCACCTGTGACGACAGGCTCCTCGCGTCCATCTTCCCCTGGGACGTCTAGTTCTCATCTAGCTACCTTAGCGATTGCTACATCCATGCATCAGCCTGGGATGGAACACAAGTCAGGTGAAATGCGCGATGCAAGACCGACTATGATGTCTGATTTGGCGAGGAGAGGGGCATCGCCAACTGTCCAGCCCATGGGAGTAGCTCACCCTCCTGTTTCTGTCGGCAACAAAGTCATCTCCATCGTCCCATCAGCGGCTCTTCCTCAAAGTCATCAAGTTCAAAAACCCACTTTACCGCCACATCATCCCGGTTCCGCACATGGTAGTGGACCTGTCGCCAGTGTTGGAGCTTCCGTCAGCAGCAGCATGTCTCACATGCCGTCAGCCGTCATGTCTGGGCATTCCCAGCAGTCAAAGATGCTCCAATCTAACCCTGTCAGTGTGACGCCAGCTATGTTGACAACGACAGCAAAGCACTACACTCCTCTTCCTCATCACCTAGCCTTTGCTGCTCCAAGACAACCTCCCATTTCAAGCTCTGATTCTACTATGAACCCTGCAGATCATGCAAGACTGAGTAAACCCACTGGCGCAGCGTCCCCAGTTACTGTCTCATCTCTCCATGCCAGCACCATTTCCACAGTACCACACATGGCTGGGCCATCAATGAACTCAGTTGTTGGAAACGAAAATAGAATGGACAGACCACATCAGGCTATTCCGCAGTTCCCATATCACCCTGGCATGGCAGGCCTGTTTTATCAGGATGCTTTATCGGCAGTGCACCCAGGTATTCATGCACAGTATCACCAACAAGCCTTTGGCCCGATGCAGTCTCTTGCTAGATCACAGAGTGTTGCCACATCTGCTGCGGCAGCGGCTGCTGCTCAAGTTGCAGCAGCGGCAGCAGCTGGAGTAAATCCCATGCAGATTATGGACCACCCAAGGCTGTTTTTTCAGCCATCTGCTGCTGCGCTAGGAGTTGGAGCTTCAGGAATAGCTAATCTGGCTGGGACAGACACTCCAGCGACGGCAGGTATCATGGACATCAGCGGTGCAACAGCCGGAATCTACAGTGTACCAATCTTTAATCTCCCTCCAGCTGGAATGCATGCTGCACAGCTAACAGCTCCTAACCCTAATGCGACATCTCCACGGCCGAGTATCTTACGTAAAAGAACATCAGAGGGGTTACGTAAGCCTCCCAGCCAGTTACCGTTCACCGCTGAGATGCTGGTGTCCAATCAGAGTGAAGCTGCAGCTAGTCCCAGATCTGATAGTACACTATCTGCACCGCACTCAACACAAAATTCACCCAAACCTGCAAGTGATTCTGGAAGTCAATCGAATGAGTCCGCAGCAGTGACGACCACCAACATCACAACAACAGAACCGCCAGCCGTCAGTCAATCCGCACCGGTGTCGCCAAACAAAATCAAGAGAGAACCTCCCTCCAGCGAGGCAGCGCCCACGTCAAGTGCAGCCACTACACCTGTGATGAATGGAGGTGCTTCTTCAGCTCCTGCCACGCCTTTACTAGCAAATGTCACAACAACGCTCAGTGATGCGGCTTCGCCGAGAAAGAAACCTCGAAAACAGAATGTAGTTGCCACGGAAGACAAGTACGGCAGTAATGTGAACTTGGAACCCGATTCTCCAACGGATGAAGACAAGAAAGCGAAACAAGATGAAGCAGACGAGGATTTGAAGTTCATATTACTAAAGAGACCAAAGATCTCCATCGTTGCTAACTACAAGATCAACACAAAGCGGCTCATAACCACTTCCAGCGAGGAAAGAAAGCCCTCCATACAAGAGATTGCCAGTCAGAAGGGAATTGTACAGAGAGCTAACGGCTGGCGGGTCCAGCACATCGCCGGACAAATGGACGAGCTGATTTCCGCAGAACAGGATGTGTTGAAAAAGATGGGGGAGTTCAGAGAGAAAATCCCAAAGGTTAAGCCTGGCCAGAAAACAAAATTCCAGGACGATTTAGTGATGTTAAACGAACTACTTCAGGGTAATATTCAAAGATCGCAGCTAGTTGTTGAGCAGCTTGGAGATTCAAGAAAATCCATGGTTAAGGTATTGGATCACAGACAACGCGTGATGGAGATCATTCAGAAGCAGATGAACAAACGAAATCCCAAGAAGAAAAGTCAATAA

Transcript

OS493_018344-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DDH6	Histone deacetylase complex subunit SAP130-A OS=Xenopus laevis OX=8355 GN=sap130-a PE=2 SV=1
Q9H0E3	Histone deacetylase complex subunit SAP130 OS=Homo sapiens OX=9606 GN=SAP130 PE=1 SV=1
Q5M7C3	Histone deacetylase complex subunit SAP130-B OS=Xenopus laevis OX=8355 GN=sap130-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004887 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16014 all species →	SAP130_C	Histone deacetylase complex subunit SAP130 C-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031963 all species →	Domain	Histone deacetylase complex subunit SAP130, C-terminal domain	Interproscan
IPR024137 all species →	Family	Histone deacetylase complex subunit SAP130	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13497 all species →	HISTONE DEACETYLASE COMPLEX SUBUNIT SAP130	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0070822 all species →	Cellular Component	Sin3-type complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19192	SAP130; histone deacetylase complex subunit SAP130	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_018344-T1 global co-expression network