Gene detail

Detailed information of OS493_018345-T1 in Lophelia pertusa

Genomic Location: scaffold_60:1842471...1843936
NR annotation: KAJ7333169.1, hypothetical protein OS493_018345 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6PHY8	Thioredoxin reductase-like selenoprotein T1b OS=Danio rerio OX=7955 GN=selenot1b PE=2 SV=3
Q802F2	Thioredoxin reductase-like selenoprotein T1a OS=Danio rerio OX=7955 GN=selenot1a PE=2 SV=3
Q6PBD1	Thioredoxin reductase-like selenoprotein T OS=Xenopus tropicalis OX=8364 GN=selenot PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009016 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10262 all species →	Rdx	Rdx family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011893 all species →	Family	Selenoprotein, Rdx-type	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR019389 all species →	Family	Selenoprotein T	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13544 all species →	SELENOPROTEIN T	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004791 all species →	Molecular Function	thioredoxin-disulfide reductase (NADPH) activity	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0045454 all species →	Biological Process	cell redox homeostasis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22366	SELENOT; thioredoxin reductase-like selenoprotein T	-	Amino acid metabolism	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_018345-T1 global co-expression network