Gene detail

Detailed information of OS493_018353-T1 in Lophelia pertusa

Genomic Location: scaffold_60:1877198...1883011
NR annotation: KAJ7333177.1, BAG molecular chaperone regulator 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006396 (this species only) · gene tree & orthology
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan
IPR036533 all species →	Homologous_superfamily	BAG domain superfamily	Interproscan
IPR039773 all species →	Family	Molecular chaperone regulator BAG	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12329 all species →	BCL2-ASSOCIATED ATHANOGENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0000774 all species →	Molecular Function	adenyl-nucleotide exchange factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050821 all species →	Biological Process	protein stabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09555	BAG1; BCL2-associated athanogene 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018353-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

30.3Max TPM

8.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.37	12.41
polyp at pH7 6	18	17	7.57	16.03
coral polyp · control treatment	16	16	10.82	23.21
coral polyp · oil and dispersant treatment	16	16	10.34	30.26
coral polyp · oil treatment	16	16	10.02	14.62
coral polyp · dispersant treatment	16	16	6.67	13.35
Polyp	10	10	7.27	10.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.60
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.35
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.14
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.28
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.24
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.67
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.59
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.96
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.96
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.18
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.45
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.12
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.30
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.53
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.33
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.62
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.22
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.25
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.15
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.18
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.73
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.71
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.71
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.51
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.24
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.01
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.27
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.50
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.31
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.