Gene detail

Detailed information of OS493_018354-T1 in Lophelia pertusa

Genomic Location: scaffold_60:1883161...1887505
NR annotation: KAJ7333178.1, hypothetical protein OS493_018354 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95NM6	Endonuclease G, mitochondrial OS=Caenorhabditis elegans OX=6239 GN=cps-6 PE=1 SV=1
O08600	Endonuclease G, mitochondrial OS=Mus musculus OX=10090 GN=Endog PE=1 SV=1
Q14249	Endonuclease G, mitochondrial OS=Homo sapiens OX=9606 GN=ENDOG PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003315 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01223 all species →	Endonuclease_NS	DNA/RNA non-specific endonuclease	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001604 all species →	Domain	DNA/RNA non-specific endonuclease	Interproscan
IPR040255 all species →	Family	Non-specific endonuclease	Interproscan
IPR020821 all species →	Domain	Extracellular Endonuclease, subunit A	Interproscan
IPR044925 all species →	Homologous_superfamily	His-Me finger superfamily	Interproscan
IPR044929 all species →	Homologous_superfamily	DNA/RNA non-specific endonuclease superfamily	Interproscan
IPR018524 all species →	Active_site	DNA/RNA non-specific endonuclease, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13966 all species →	ENDONUCLEASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0000014 all species →	Molecular Function	single-stranded DNA endodeoxyribonuclease activity	Interproscan
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018354-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018354-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

102TPM > 0

7Conditions

11.8Max TPM

5.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.73	10.45
polyp at pH7 6	18	14	4.34	9.34
coral polyp · control treatment	16	16	6.12	8.58
coral polyp · oil and dispersant treatment	16	15	5.28	9.69
coral polyp · oil treatment	16	16	6.14	11.79
coral polyp · dispersant treatment	16	16	5.25	10.97
Polyp	10	8	2.74	5.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.03
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.51
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.86
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.65
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.71
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.69
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.80
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.59
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.39
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.95
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.07
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.98
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.34
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.05
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.56
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.91
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.79
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.05
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.53
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.46
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.34
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.58
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.86
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.