Gene detail

Detailed information of OS493_018381-T1 in Lophelia pertusa

Genomic Location: scaffold_61:30634...45412
NR annotation: KAJ7391338.1, hypothetical protein OS493_018381 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q54MF3	Calcineurin subunit B type 2 OS=Dictyostelium discoideum OX=44689 GN=cnbB PE=3 SV=1
P87072	Calcineurin subunit B OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=cnb-1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009781 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499 all species →	EF-hand_7	EF-hand domain pair	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002048 all species →	Domain	EF-hand domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR018247 all species →	Binding_site	EF-Hand 1, calcium-binding site	Interproscan
IPR015757 all species →	Family	Calcineurin B protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45942 all species →	PROTEIN PHOSPATASE 3 REGULATORY SUBUNIT B ALPHA ISOFORM TYPE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005955 all species →	Cellular Component	calcineurin complex	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0008597 all species →	Molecular Function	calcium-dependent protein serine/threonine phosphatase regulator activity	Interproscan
GO:0019902 all species →	Molecular Function	phosphatase binding	Interproscan
GO:0097720 all species →	Biological Process	calcineurin-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17610	CHP, CHP1; calcineurin B homologous protein 1	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018381-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

37.6Max TPM

15.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.86	18.71
polyp at pH7 6	18	18	14.51	21.16
coral polyp · control treatment	16	16	20.90	37.57
coral polyp · oil and dispersant treatment	16	16	13.43	34.86
coral polyp · oil treatment	16	16	18.45	28.97
coral polyp · dispersant treatment	16	16	8.69	16.56
Polyp	10	10	18.18	25.95

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.30
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.69
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.16
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.48
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.35
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.13
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.65
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.47
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.64
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.85
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.57
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.04
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.98
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.64
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.14
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.33
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.89
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.37
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.37
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.46
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.97
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.09
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.72
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.45
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.73
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.13
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.56
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.69
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.84
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.85
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.02
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	22.59
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.18
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.33
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.45

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.