Gene detail

Detailed information of OS493_018385-T1 in Lophelia pertusa

Genomic Location: scaffold_61:87973...101622
NR annotation: KAJ7391342.1, hypothetical protein OS493_018385 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28FJ2	Ankyrin repeat domain-containing protein 37 OS=Xenopus tropicalis OX=8364 GN=ankrd37 PE=2 SV=1
Q0VC93	Ankyrin repeat domain-containing protein 37 OS=Bos taurus OX=9913 GN=ANKRD37 PE=2 SV=1
Q7Z713	Ankyrin repeat domain-containing protein 37 OS=Homo sapiens OX=9606 GN=ANKRD37 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002434 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24141 all species →	2-5A-DEPENDENT RIBONUCLEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004540 all species →	Molecular Function	RNA nuclease activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018385-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018385-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

96TPM > 0

7Conditions

12.5Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	15	2.55	5.95
polyp at pH7 6	18	12	2.05	4.69
coral polyp · control treatment	16	16	5.73	12.51
coral polyp · oil and dispersant treatment	16	16	4.07	8.17
coral polyp · oil treatment	16	16	3.97	8.53
coral polyp · dispersant treatment	16	15	4.47	7.97
Polyp	10	6	0.55	1.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.95
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.73
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.85
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.72
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.39
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.01
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.36
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.82
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.91
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.43
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.07
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.51
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.10
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.15
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.72
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.74
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.69
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.27
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.17
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.97
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.78
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.33
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.97
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.18
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.54
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.