Gene detail

Detailed information of OS493_018388-T1 in Lophelia pertusa

Genomic Location: scaffold_61:161999...170931
NR annotation: KAJ7391345.1, hypothetical protein OS493_018388 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9CPU4	Glutathione S-transferase 3, mitochondrial OS=Mus musculus OX=10090 GN=Mgst3 PE=1 SV=1
Q3T100	Glutathione S-transferase 3, mitochondrial OS=Bos taurus OX=9913 GN=MGST3 PE=2 SV=1
O14880	Glutathione S-transferase 3, mitochondrial OS=Homo sapiens OX=9606 GN=MGST3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008154 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01124 all species →	MAPEG	MAPEG family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001129 all species →	Family	Membrane-associated, eicosanoid/glutathione metabolism (MAPEG) protein	Interproscan
IPR023352 all species →	Homologous_superfamily	Membrane associated eicosanoid/glutathione metabolism-like domain superfamily	Interproscan
IPR050997 all species →	Family	Membrane-associated proteins in eicosanoid and glutathione metabolism	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10250 all species →	MICROSOMAL GLUTATHIONE S-TRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004364 all species →	Molecular Function	glutathione transferase activity	Interproscan
GO:0004602 all species →	Molecular Function	glutathione peroxidase activity	Interproscan
GO:0005635 all species →	Cellular Component	nuclear envelope	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00799	GST, gst; glutathione S-transferase	EC:2.5.1.18	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018388-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

146.8Max TPM

66.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	55.77	75.46
polyp at pH7 6	18	18	68.58	94.56
coral polyp · control treatment	16	16	77.14	143.88
coral polyp · oil and dispersant treatment	16	16	68.58	146.84
coral polyp · oil treatment	16	16	67.51	92.92
coral polyp · dispersant treatment	16	16	55.67	95.41
Polyp	10	10	80.92	107.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.85
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.09
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.71
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.13
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.17
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.09
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.37
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.89
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.41
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	94.56
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	91.28
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.87
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	83.06
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.13
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.48
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.54
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.92
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.81
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.97
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	61.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.19
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	143.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	80.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.42
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.85
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.67
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.09
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.17
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	146.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.75
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	77.93
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	72.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.49
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.37
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.10
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.56
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.20
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.02
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	92.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.68
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.43
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.36
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.25
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.11
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.95
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.67
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.71
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.69
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.80
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	107.70
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	101.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	94.12
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	91.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	83.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	75.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	73.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	71.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	65.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	44.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.