Gene detail

Detailed information of OS493_018401-T1 in Lophelia pertusa

Genomic Location: scaffold_61:306960...308944
NR annotation: KAJ7391358.1, hypothetical protein OS493_018401 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P4K5	Pre-mRNA-splicing regulator WTAP OS=Xenopus tropicalis OX=8364 GN=wtap PE=2 SV=1
Q15007	Pre-mRNA-splicing regulator WTAP OS=Homo sapiens OX=9606 GN=WTAP PE=1 SV=2
Q9ER69	Pre-mRNA-splicing regulator WTAP OS=Mus musculus OX=10090 GN=Wtap PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004659 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17098 all species →	Wtap	WTAP/Mum2p family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033757 all species →	Family	Pre-mRNA-splicing regulator WTAP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15217 all species →	WILMS' TUMOR 1-ASSOCIATING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000381 all species →	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018401-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018401-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

78.8Max TPM

24.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.52	31.40
polyp at pH7 6	18	18	22.15	28.93
coral polyp · control treatment	16	16	29.41	78.85
coral polyp · oil and dispersant treatment	16	16	26.32	52.90
coral polyp · oil treatment	16	16	25.35	32.03
coral polyp · dispersant treatment	16	16	16.66	32.79
Polyp	10	10	28.00	41.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.83
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.18
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.69
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.99
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.74
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.57
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.52
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.97
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.19
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.60
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.84
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.52
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.85
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.53
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.35
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.73
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.17
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.99
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.85
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.43
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.03
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.73
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.76
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.84
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.74
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.70
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.32
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.73
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.43
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.86
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.81
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.35
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.11
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	41.54
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	41.15
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	37.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	29.99
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	28.73
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	27.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	19.79
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.21
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.