Gene detail

Detailed information of OS493_018402-T1 in Lophelia pertusa

Genomic Location: scaffold_61:316040...323991
NR annotation: KAJ7391359.1, RWD domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H446	RWD domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RWDD1 PE=1 SV=1
Q99ND9	RWD domain-containing protein 1 OS=Rattus norvegicus OX=10116 GN=Rwdd1 PE=2 SV=1
Q9CQK7	RWD domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rwdd1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007792 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05773 all species →	RWD	RWD domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006575 all species →	Domain	RWD domain	Interproscan
IPR040213 all species →	Family	GIR2-like	Interproscan
IPR016135 all species →	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12292 all species →	RWD DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0002181 all species →	Biological Process	cytoplasmic translation	Interproscan
GO:0005844 all species →	Cellular Component	obsolete polysome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018402-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018402-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

151.0Max TPM

34.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	39.50	77.80
polyp at pH7 6	18	18	45.22	81.89
coral polyp · control treatment	16	16	28.80	51.70
coral polyp · oil and dispersant treatment	16	16	23.94	44.51
coral polyp · oil treatment	16	16	27.56	41.26
coral polyp · dispersant treatment	16	16	16.09	33.22
Polyp	10	10	69.93	151.04

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.85
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	59.46
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.50
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.59
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.79
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.90
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.89
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.35
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.36
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.54
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.70
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.40
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.37
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.58
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.17
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.63
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.15
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.70
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.28
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.96
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.87
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.43
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.97
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.26
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.12
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.25
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.12
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.30
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.37
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.22
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.10
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.54
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.66
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.46
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	151.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	110.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	91.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	79.01
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	64.66
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	57.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	47.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	42.44
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	30.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.71

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.