Gene detail

Detailed information of OS493_018440-T1 in Lophelia pertusa

Genomic Location: scaffold_61:740466...740834
NR annotation: KAJ7391396.1, hypothetical protein OS493_018440 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0012247 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12926 all species →	MOZART2	Mitotic-spindle organizing gamma-tubulin ring associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024332 all species →	Family	MOZART2 family	Interproscan

PANTHER

No PANTHER signature was detected for OS493_018440-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_018440-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06875	PDCD5, TFAR19; programmed cell death protein 5	-	Signaling proteins	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018440-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

23.2Max TPM

5.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.61	10.11
polyp at pH7 6	18	18	6.17	12.78
coral polyp · control treatment	16	16	4.00	8.44
coral polyp · oil and dispersant treatment	16	15	3.24	6.76
coral polyp · oil treatment	16	16	3.98	8.57
coral polyp · dispersant treatment	16	16	2.23	7.74
Polyp	10	10	15.12	23.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.14
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.10
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.70
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.82
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.78
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.49
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.58
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.12
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.07
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.35
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.13
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.47
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.39
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.09
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.56
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.08
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.74
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.17
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.64
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.08
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.47
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	18.56
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.21
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	11.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.78

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.