Gene detail

Detailed information of OS493_018442-T1 in Lophelia pertusa

Genomic Location: scaffold_61:749652...753974
NR annotation: KAJ7391398.1, hypothetical protein OS493_018442 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q32L99	Prostaglandin reductase 2 OS=Bos taurus OX=9913 GN=PTGR2 PE=2 SV=1
Q5BK81	Prostaglandin reductase 2 OS=Rattus norvegicus OX=10116 GN=Ptgr2 PE=2 SV=2
Q5R806	Prostaglandin reductase 2 OS=Pongo abelii OX=9601 GN=PTGR2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002336 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16884 all species →	ADH_N_2	N-terminal domain of oxidoreductase	Family	Interproscan
PF00107 all species →	ADH_zinc_N	Zinc-binding dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011032 all species →	Homologous_superfamily	GroES-like superfamily	Interproscan
IPR041694 all species →	Domain	Oxidoreductase, N-terminal domain	Interproscan
IPR036291 all species →	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR020843 all species →	Domain	Polyketide synthase, enoylreductase domain	Interproscan
IPR013149 all species →	Domain	Alcohol dehydrogenase-like, C-terminal	Interproscan
IPR045010 all species →	Family	Medium-chain dehydrogenase/reductase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43205 all species →	PROSTAGLANDIN REDUCTASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0006693 all species →	Biological Process	prostaglandin metabolic process	Interproscan
GO:0016628 all species →	Molecular Function	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	Interproscan
GO:0047522 all species →	Molecular Function	15-oxoprostaglandin 13-oxidase [NAD(P)+] activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13949	PTGR2, ZADH1; prostaglandin reductase 2	EC:1.3.1.48	Arachidonic acid metabolism	ko00590	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018442-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

67TPM > 0

7Conditions

5.1Max TPM

0.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	0.54	1.28
polyp at pH7 6	18	8	0.38	1.38
coral polyp · control treatment	16	10	0.78	3.56
coral polyp · oil and dispersant treatment	16	9	0.60	2.70
coral polyp · oil treatment	16	11	0.78	5.14
coral polyp · dispersant treatment	16	10	0.74	3.43
Polyp	10	7	0.63	1.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.73
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.58
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.38
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.69
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.52
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.30
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.27
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.47
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.30
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.02
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.28
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.18
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.