Gene detail

Detailed information of OS493_018443-T1 in Lophelia pertusa

Genomic Location: scaffold_61:756053...756850
NR annotation: KAJ7391399.1, Pituitary-specific positive transcription factor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YGL7	Pituitary-specific positive transcription factor 1 OS=Gallus gallus OX=9031 GN=POU1F1 PE=2 SV=1
Q05749	Pituitary-specific positive transcription factor 1 OS=Meleagris gallopavo OX=9103 GN=POU1F1 PE=2 SV=2
P10036	Pituitary-specific positive transcription factor 1 OS=Bos taurus OX=9913 GN=POU1F1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157 all species →	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046 all species →	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000327 all species →	Domain	POU-specific domain	Interproscan
IPR010982 all species →	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR050255 all species →	Family	POU domain transcription factor	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR013847 all species →	Domain	POU domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636 all species →	POU DOMAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09363	POU1F, PIT1; POU domain transcription factor, class 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018443-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

11.0Max TPM

2.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.70	3.60
polyp at pH7 6	18	16	1.83	5.28
coral polyp · control treatment	16	16	3.16	5.81
coral polyp · oil and dispersant treatment	16	15	2.67	4.91
coral polyp · oil treatment	16	16	1.84	3.77
coral polyp · dispersant treatment	16	16	2.15	7.80
Polyp	10	9	4.01	10.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.30
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.73
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.46
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.24
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.77
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.59
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.32
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.21
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.05
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.00
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.91
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.81
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.34
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.63
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.20
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.16
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.64
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.73
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.63
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.72
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.03
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.66
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.97
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.96
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.