Gene detail

Detailed information of OS493_018444-T1 in Lophelia pertusa

Genomic Location: scaffold_61:764965...779144
NR annotation: KAJ7391400.1, hypothetical protein OS493_018444 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BUB6	Uronyl 2-sulfotransferase OS=Mus musculus OX=10090 GN=Ust PE=2 SV=3
Q9Y2C2	Uronyl 2-sulfotransferase OS=Homo sapiens OX=9606 GN=UST PE=1 SV=1
Q76KB1	Heparan sulfate 2-O-sulfotransferase 1 OS=Gallus gallus OX=9031 GN=HS2ST1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002275 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03567 all species →	Sulfotransfer_2	Sulfotransferase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007734 all species →	Family	Heparan sulphate 2-O-sulfotransferase	Interproscan
IPR005331 all species →	Family	Sulfotransferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12129 all species →	HEPARAN SULFATE 2-O-SULFOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008146 all species →	Molecular Function	sulfotransferase activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03193	UST; dermatan/chondrotin sulfate uronyl 2-O-sulfotransferase UST	EC:2.8.2.-	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018444-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

16.6Max TPM

5.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.28	6.15
polyp at pH7 6	18	16	4.53	8.26
coral polyp · control treatment	16	16	6.19	13.47
coral polyp · oil and dispersant treatment	16	16	7.74	16.64
coral polyp · oil treatment	16	15	5.31	10.59
coral polyp · dispersant treatment	16	15	6.09	13.37
Polyp	10	9	1.51	3.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.24
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.23
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.83
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.70
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.92
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.26
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.69
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.38
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.78
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.48
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.15
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.58
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.49
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.90
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.16
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.70
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.85
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.37
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.66
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.54
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.86
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.97
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.10
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.03
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.77
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.40
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.02
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.84
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.