Gene detail

Detailed information of OS493_018448-T1 in Lophelia pertusa

Genomic Location: scaffold_61:798084...798923
NR annotation: KAJ7391404.1, hypothetical protein OS493_018448 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8CI32	BAG family molecular chaperone regulator 5 OS=Mus musculus OX=10090 GN=Bag5 PE=1 SV=1
Q5F486	BAG family molecular chaperone regulator 5 OS=Gallus gallus OX=9031 GN=BAG5 PE=2 SV=1
Q2TA08	BAG family molecular chaperone regulator 5 OS=Bos taurus OX=9913 GN=BAG5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001677 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02179 all species →	BAG	BAG domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036533 all species →	Homologous_superfamily	BAG domain superfamily	Interproscan
IPR003103 all species →	Domain	BAG domain	Interproscan
IPR039773 all species →	Family	Molecular chaperone regulator BAG	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12329 all species →	BCL2-ASSOCIATED ATHANOGENE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0051087 all species →	Molecular Function	protein-folding chaperone binding	Interproscan
GO:0000774 all species →	Molecular Function	adenyl-nucleotide exchange factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0050821 all species →	Biological Process	protein stabilization	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018448-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018448-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

902.8Max TPM

14.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	1.53	4.49
polyp at pH7 6	18	18	2.43	9.35
coral polyp · control treatment	16	16	3.91	24.26
coral polyp · oil and dispersant treatment	16	15	2.66	14.45
coral polyp · oil treatment	16	16	1.78	4.21
coral polyp · dispersant treatment	16	16	11.61	49.18
Polyp	10	10	122.90	902.81

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.79
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.28
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.65
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.57
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.60
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.42
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.13
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.56
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.50
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.26
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.54
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.80
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.08
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.92
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.96
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.71
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.14
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.89
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.85
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.44
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.41
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.97
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.07
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.46
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.42
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.71
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.73
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	902.81
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	251.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	55.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	2.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.49
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.67
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.14

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.