Gene detail

Detailed information of OS493_018457-T1 in Lophelia pertusa

Genomic Location: scaffold_61:874010...882410
NR annotation: KAJ7391412.1, Transcription initiation factor TFIID subunit 12 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8VE65	Transcription initiation factor TFIID subunit 12 OS=Mus musculus OX=10090 GN=Taf12 PE=1 SV=1
Q3T174	Transcription initiation factor TFIID subunit 12 OS=Bos taurus OX=9913 GN=TAF12 PE=2 SV=1
Q16514	Transcription initiation factor TFIID subunit 12 OS=Homo sapiens OX=9606 GN=TAF12 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005618 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03847 all species →	TFIID_20kDa	Transcription initiation factor TFIID subunit A	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003228 all species →	Domain	Transcription initiation factor TFIID subunit 12 domain	Interproscan
IPR037794 all species →	Family	Transcription initiation factor TFIID subunit 12	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12264 all species →	TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005669 all species →	Cellular Component	transcription factor TFIID complex	Interproscan
GO:0006352 all species →	Biological Process	DNA-templated transcription initiation	Interproscan
GO:0000124 all species →	Cellular Component	SAGA complex	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0017025 all species →	Molecular Function	TBP-class protein binding	Interproscan
GO:0051123 all species →	Biological Process	RNA polymerase II preinitiation complex assembly	Interproscan
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_018457-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018457-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

53.4Max TPM

32.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	34.13	53.43
polyp at pH7 6	18	18	32.48	42.77
coral polyp · control treatment	16	16	37.20	52.77
coral polyp · oil and dispersant treatment	16	16	32.72	52.47
coral polyp · oil treatment	16	16	37.92	51.43
coral polyp · dispersant treatment	16	16	22.79	48.68
Polyp	10	10	29.73	41.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.43
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.67
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.42
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.63
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.87
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.55
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.38
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.53
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.77
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.79
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.92
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.81
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.16
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.45
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.34
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.02
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.30
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.37
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.77
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.67
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.66
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.07
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.57
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.34
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.95
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.23
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.23
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.37
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.48
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.23
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.19
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.48
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.83
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.54
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.18
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.09
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.83
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.95
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.96
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.86
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.63
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.11
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	41.89
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	40.82
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	40.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	35.99
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	35.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	32.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	19.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.77
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	16.56
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.56

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.