Detailed information of OS493_018527-T1 in Lophelia pertusa

Genomic Location: scaffold_61:1637540...1653802
NR annotation: KAJ7391480.1, AAA ATPase midasin [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NU22Midasin OS=Homo sapiens OX=9606 GN=MDN1 PE=1 SV=2
Q869L3Midasin OS=Dictyostelium discoideum OX=44689 GN=mdn1 PE=3 SV=2
A0A1P8AUY4Midasin OS=Arabidopsis thaliana OX=3702 GN=MDN1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001659 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF17867
all species →		AAA_lid_7Midasin AAA lid domainDomainInterproscan
PF07728
all species →		AAA_5AAA domain (dynein-related subfamily)DomainInterproscan
PF21108
all species →		MDN1_4thMidasin AAA+ ATPase lid domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR040848
all species →		DomainMidasin, AAA lid domain 7Interproscan
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003593
all species →		DomainAAA+ ATPase domainInterproscan
IPR011704
all species →		DomainATPase, dynein-related, AAA domainInterproscan
IPR048617
all species →		DomainMidasin, lid domain 4Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48103
all species →		MIDASIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000027
all species →		Biological Processribosomal large subunit assemblyInterproscan
GO:0000055
all species →		Biological Processribosomal large subunit export from nucleusInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0030687
all species →		Cellular Componentpreribosome, large subunit precursorInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_018527-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_018527-T1 global co-expression network
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