Gene detail

Detailed information of OS493_018577-T1 in Lophelia pertusa

Genomic Location: scaffold_61:2147490...2150392
NR annotation: KAJ7391526.1, hypothetical protein OS493_018577 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5REV9	Sodium-dependent phosphate transport protein 2B OS=Pongo abelii OX=9601 GN=SLC34A2 PE=2 SV=1
O95436	Sodium-dependent phosphate transport protein 2B OS=Homo sapiens OX=9606 GN=SLC34A2 PE=1 SV=3
Q27960	Sodium-dependent phosphate transport protein 2B OS=Bos taurus OX=9913 GN=SLC34A2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001416 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02690 all species →	Na_Pi_cotrans	Na+/Pi-cotransporter	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003841 all species →	Family	Sodium-dependent phosphate transport protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10010 all species →	SOLUTE CARRIER FAMILY 34 SODIUM PHOSPHATE , MEMBER 2-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005436 all species →	Molecular Function	sodium:phosphate symporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0044341 all species →	Biological Process	sodium-dependent phosphate transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14683	SLC34A, NPT, nptA; solute carrier family 34 (sodium-dependent phosphate cotransporter)	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_018577-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

83.3Max TPM

23.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.35	32.98
polyp at pH7 6	18	18	16.41	27.05
coral polyp · control treatment	16	16	20.85	58.75
coral polyp · oil and dispersant treatment	16	16	29.33	51.60
coral polyp · oil treatment	16	16	17.09	33.17
coral polyp · dispersant treatment	16	16	50.66	83.27
Polyp	10	10	10.87	17.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.55
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.39
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.86
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.69
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.01
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.05
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.85
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.18
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.07
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.68
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.92
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.75
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.75
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.91
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.15
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.79
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.51
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.47
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.60
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.89
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.28
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.26
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.88
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.48
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.38
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.57
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.37
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.37
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.33
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.26
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.51
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.37
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.27
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.70
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	71.22
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.27
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.32
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	12.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.79
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.69
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	11.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.15

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.